Job Description P0A9Q9 Confidence 100.00% Date Thu Jan 5 11:11:02 GMT 2012 Rank 45 Aligned Residues 301 % Identity 18% Template c3hq4R_ PDB info PDB header:oxidoreductase Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1; PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	N	V	G	F	I	G	W	R	G	M	V	G	S	V	L	M	Q	R	M	V	E	E	R	D	F	D	A	I	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	F	S	T	S	Q	L	G	Q	A	A	P	S	F	G	G	T	T	G	T	L	Q	D	A	F	D	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		A	V	K	V	A	I	N	G	F	.	G	R	I	G	R	L	A	F	R	R	I	Q	E	V	E	G	L	E	V	V	A	V	N	D	L	T	D	D	D	M	L	A	H	L	L	K	Y	D	T	M	Q	G	R	F	T	G	E	V	E	V	V	D	G	G	F	R	V	N	G	K	E	V	K	S	F	S	E	P	D	A
Template Known Secondary structure											.	S											T	T	S	T	T									S	S													T	T	T					S						T	T					T	T									S		G
Template Predicted Secondary structure											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		61	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		E	A	L	K	.	.	.	.	A	L	D	I	I	V	T	C	Q	G	G	D	Y	T	N	E	I	Y	P	K	L	R	E	S	G	W	Q	G	Y	W	I	D	A	A	S	S	L	R	M	K	D	D	A	I	I	I	L	D	P	V	N	Q	D	V	I	T	D	G	L	N	N	G	I	R	T	F	V	G	G	N	C	T
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																												.	.							.	.																							.	.	.	.
Template Conservation																																					.	.							.	.																							.	.	.	.
Template Sequence		S	K	L	P	W	K	D	L	N	I	D	V	V	L	E	C	T	G	F	Y	T	D	K	D	K	A	Q	A	H	I	E	A	G	A	K	.	.	K	V	L	I	S	A	.	.	P	A	T	G	D	L	K	T	I	V	F	N	T	N	H	Q	E	L	D	G	S	E	.	.	.	.	T	V	V	S	G	A	S	S	T
Template Known Secondary structure		G	G	S		T	T	T	T	T		S						S	S	S			B											T		S	.	.					S	S	.	.			B	S	S						T	T	T	T	G	G	G			S			.	.	.	.	S
Template Predicted Secondary structure																																					.	.							.	.																							.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	L	M	L	M	S	L	G	G	L	F	A	N	D	L	V	D	W	V	S	V	A	T	Y	Q	A	A	S	G	G	G	A	R	H	M	R	E	L	L	T	Q	M	G	H	L	Y	G	H	V	A	D	E	L	A	T	P	S	S	A	I	L	D	I	E	R	K	V	T	T	L	T	R	S	G	E	L	P	V	D
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	S	L	A	P	V	A	K	V	L	N	D	D	F	G	L	V	E	G	L	M	T	T	I	H	A	Y	T	G	D	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	D	A	P	H	R	K	G	D	K
Template Known Secondary structure																															T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				T	T			T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																																					.	.	.	.	190	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		N	F	G	V	P	L	A	G	S	L	I	P	W	I	D	K	Q	L	D	N	G	Q	S	R	E	E	W	K	G	Q	A	E	T	N	K	I	L	N	T	S	S	V	I	P	V	D	G	L	C	V	R	V	G	A	L	R	C	H	S	Q	A	F	T	I	K	L	K	K	D	.	V	S	I	P	T	V	E	E	L	L
Query Conservation																																																																							.
Alig confidence																.	.	.	.	.																	.	.	.	.	.	.	.	.																											.
Template Conservation																.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Sequence		R	R	A	R	A	A	A	E	N	I	I	P	N	S	.	.	.	.	.	T	G	A	A	K	A	I	G	K	V	I	P	E	I	D	G	.	.	.	.	.	.	.	.	K	L	D	G	G	A	Q	R	V	P	V	A	T	G	S	L	T	E	L	T	V	V	L	E	K	Q	D	V	T	V	E	Q	V	N	E	A	M
Template Known Secondary structure		T	T	T	S		G	G	G							.	.	.	.	.			T	T	T	T	G	G	G	T		G	G	G	T	T	.	.	.	.	.	.	.	.	S									S		S	S											S	S	S	S
Template Predicted Secondary structure																.	.	.	.	.																	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.						.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		A	A	H	N	P	W	A	K	V	V	P	N	D	.	.	.	.	.	R	E	I	T	M	R	E	L	T	P	A	A	V	T	G	T	L	T	T	P	V	G	R	L	R	K	L	N	M	G	P	E	F	L	S	A	F	T	V	G	D	Q	L	L	W	G	A	A	E	P	L	R	R	M	L	R	Q	L	A
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																							.	.	.	.	.	.	.															.
Template Conservation																																										.	.	.	.	.	.	.															.
Template Sequence		K	N	A	S	N	E	S	F	G	Y	T	E	D	E	I	V	S	S	D	V	V	G	M	T	Y	G	S	L	F	D	A	T	Q	T	R	V	M	S	V	G	.	.	.	.	.	.	.	D	R	Q	L	V	K	V	A	A	W	Y	D	N	E	.	M	S	Y	T	A	Q	L	V	R	T	L	A	Y	L	A
Template Known Secondary structure				T		S	S	S						S				G	G	G	G	T	T				S					G	G	G							T	.	.	.	.	.	.	.	T												T	T	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.															.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.								.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions