Job Description P0A9Q9 Confidence 100.00% Date Thu Jan 5 11:11:02 GMT 2012 Rank 51 Aligned Residues 303 % Identity 17% Template c3hjaB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.											.	.	.	.	.	.	.	40	.	.	.											.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	V	G	F	I	G	W	R	G	M	V	G	S	V	L	M	Q	R	M	V	E	E	R	D	F	D	A	I	R	P	.	.	.	.	.	.	.	.	.	.	V	F	F	S	T	S	Q	L	G	Q	A	.	.	.	.	.	.	.	.	.	.	A	P	S	F	G	G	T	T	G	T	L	Q	D	A	F	D	L	E
Query Conservation																																	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence										.																.							.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation										.																.
Template Sequence		M	K	L	A	I	N	G	F	.	G	R	I	G	R	N	V	F	K	I	A	F	E	R	G	.	I	D	I	V	A	I	N	D	L	T	D	P	K	T	L	A	H	L	L	K	Y	D	S	T	F	G	V	Y	N	K	K	V	E	S	R	D	G	A	I	V	V	D	G	R	E	I	K	I	I	A	E	R	D	P	K
Template Known Secondary structure										.	S													T	T	.									S	S													T	T	T				S	S						T	T					T	T									S	S	G	G
Template Predicted Secondary structure										.																.
Template SS confidence
		1	.	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		62	.	.					.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure					.	.	.	.										.	.	.	.	.
Query SS confidence					.	.	.	.										.	.	.	.	.
Query Sequence		A	L	K	.	.	.	.	A	L	D	I	I	V	T	C	Q	.	.	.	.	.	G	G	D	Y	T	N	E	I	Y	P	K	L	R	E	S	G	W	Q	G	Y	W	I	D	A	A	S	S	L	R	M	K	D	D	A	I	I	I	L	D	P	V	N	Q	D	V	I	T	D	G	L	N	N	G	I	R	T	F	V	G
Query Conservation					.	.	.	.										.	.	.	.	.
Alig confidence					.	.	.	.										.	.	.	.	.																			.	.										.	.																				.	.	.	.
Template Conservation																																									.	.										.	.																				.	.	.	.
Template Sequence		N	L	P	W	A	K	L	G	I	D	V	V	I	E	S	T	G	V	F	S	S	A	T	S	D	K	G	G	Y	L	D	H	V	N	H	A	G	A	K	.	.	K	V	I	L	T	V	P	A	K	.	.	D	E	I	K	T	I	V	L	G	V	N	D	H	D	I	N	S	D	L	.	.	.	.	K	A	V	S	N
Template Known Secondary structure		G			T	T	T	T	T		S						S	S	S			S	S			T	T			G	G	G	G	T	T	T	S			S	.	.					S	S			S	.	.	S							T	T	T	S	G	G	G			T	T		.	.	.	.
Template Predicted Secondary structure																																									.	.										.	.																				.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	C	T	V	S	L	M	L	M	S	L	G	G	L	F	A	N	D	L	V	D	W	V	S	V	A	T	Y	Q	A	A	S	G	G	G	A	R	H	M	R	E	L	L	T	Q	M	G	H	L	Y	G	H	V	A	D	E	L	A	T	P	S	S	A	I	L	D	I	E	R	K	V	T	T	L	T	R	S	G	E
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	C	T	T	N	C	L	A	P	L	A	K	V	L	H	E	S	F	G	I	E	Q	G	L	M	T	T	V	H	A	Y	T	N	D	Q	R	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	P
Template Known Secondary structure																																			T	T	S	B	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.																																							190	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		L	P	V	D	N	F	G	V	P	L	A	G	S	L	I	P	W	I	D	K	Q	L	D	N	G	Q	S	R	E	E	W	K	G	Q	A	E	T	N	K	I	L	N	T	S	S	V	I	P	V	D	G	L	C	V	R	V	G	A	L	R	C	H	S	Q	A	F	T	I	K	L	.	K	K	D	V	S	I	P	T	V
Query Conservation																																																																								.
Alig confidence																		.	.	.	.	.																			.	.	.	.	.	.	.	.																								.
Template Conservation																		.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		H	S	D	L	R	R	A	R	A	A	A	L	S	I	I	P	.	.	.	.	.	T	S	T	G	A	A	K	A	V	G	L	V	L	P	E	L	K	G	.	.	.	.	.	.	.	.	K	L	N	G	T	S	M	R	V	P	V	P	T	G	S	I	V	D	L	T	V	Q	L	K	K	K	D	V	T	K	E	E	I
Template Known Secondary structure			S	S	T	T	T	T	S	B	T	T	T	S				.	.	.	.	.					T	T	T	T						G	G	G	T	T	.	.	.	.	.	.	.	.	T									S		S	S											S		T	T
Template Predicted Secondary structure																		.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	L	L	A	A	H	N	P	W	A	K	V	V	P	N	D	R	E	I	T	M	R	E	L	T	P	A	A	V	T	G	T	L	T	T	P	V	G	R	L	R	K	L	N	M	G	P	E	F	L	S	A	F	T	V	G	D	Q	L	L	W	G	A	A	E	P	L	R	R	M	L	R	Q	L
Query Conservation
Alig confidence																																																														.
Template Conservation																																																														.
Template Sequence		N	S	V	L	R	K	A	S	E	T	P	E	L	K	G	I	L	G	Y	T	E	D	P	I	V	S	S	D	I	K	G	N	S	H	S	S	I	V	D	G	L	E	T	M	V	L	E	N	G	F	A	K	I	L	S	W	Y	D	N	E	.	F	G	Y	S	T	R	V	V	D	L	A	Q	K	L
Template Known Secondary structure									T	T	S	T	T	T	T	T	T						S				G	G	G	G	T	T				S					G	G	G					S	T	T										T	T	.
Template Predicted Secondary structure																																																														.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions