Job Description P0A9Q9 Confidence 95.60% Date Thu Jan 5 11:11:02 GMT 2012 Rank 376 Aligned Residues 148 % Identity 14% Template c1zcjA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	N	V	G	F	I	G	W	R	G	M	V	G	S	V	L	M	Q	R	M	V	E	E	R	D	F	D	A	I	R	P	V	F	F	S	T	S	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	A	A	P	S	F	G	G	T	T	G	T	L	Q	D	A	F	D	L	E	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																	.	.	.	.
Template Sequence		V	S	S	V	G	V	L	G	L	.	G	T	M	G	R	G	I	A	I	S	F	A	R	V	G	I	.	.	.	.	S	V	V	A	V	E	S	D	P	K	Q	L	D	A	A	K	K	I	I	T	F	T	L	E	K	E	A	S	R	A	H	Q	N	G	Q	A	S	A	K	P	K	L	R	F	S	S	S	T	K	E
Template Known Secondary structure											.	S												T	T	T		.	.	.	.							S	S																									T	T												S		G	G	G
Template Predicted Secondary structure											.																	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320					.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.									.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																				.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		L	K	A	L	D	I	I	V	T	C	Q	G	G	D	Y	T	N	E	.	.	.	I	Y	P	K	L	R	E	S	G	W	Q	G	Y	W	I	D	A	A	S	S	L	R	M	K	.	.	.	.	.	.	.	.	D	D	A	I	I	I	L	D	P	V	N	Q	D	V	I	T	D	G	L	N	N	G	I	R	T	F	V
Query Conservation																				.	.	.																									.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																									.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		L	S	T	V	D	L	V	V	E	A	V	F	E	D	M	N	L	K	K	K	V	F	A	E	L	S	A	L	C	K	P	G	A	F	L	C	T	N	T	S	A	L	N	V	D	D	I	A	S	S	T	D	R	P	Q	L	V	I	G	T	H	F	F	S	P	A	H	V	M	R	L	L	E	.	.	.	.	V	I	P
Template Known Secondary structure		G	T	T		S								S																S		T	T								S	S	S							T	T	S	S		G	G	G								S	S	T	T	T						.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.					.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	N	C	T	V	S	L	M	L	M	S	L	G	G	L	F	A	N	D	L	V	D	W	V	S	V
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		S	R	Y	S	S	P	T	T	I	A	T	V	M	S	.	L	S	K	K	I	G	K	I	G	V	V	V
Template Known Secondary structure			S	S												.					T	T						B
Template Predicted Secondary structure																.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460		.	.	.	.	.	.	.	.	.	470	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions