Return to main results Retrieve Phyre Job Id

Job DescriptionP0ABU5
Confidence99.85%DateThu Jan 5 11:16:24 GMT 2012
Rank26Aligned Residues159
% Identity21%Templatec3graA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:transcriptional regulator, arac family; PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.... .....40.........50.........60.........70.....
Predicted Secondary structure 










......

























Query SS confidence 
































. . . . . .








































Query Sequence  KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGA. . . . . . QAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEI
Query Conservation 








 
  

 
  
   
   
 


 ...... 
   

                   
    
         
Alig confidence 






.....




















......













..................








Template Conservation   

 


.....   
         
 
  

        
  

     
 
..................
 
  
  
Template Sequence  YRVDFIL. . . . . LEHFSXASFTVAXDVLVTANLLRADSFQFTPLSLDGDRVLS. . . . . . . . . . . . . . . . . . DLGLELVAT
Template Known Secondary structure  .....
TTB
STTSSSSSB..................TTS

Template Predicted Secondary structure 
.....














..................




Template SS confidence 















































































   30...... ...40.........50.........60.........70....... ..80......
 
   76...80.........90.........100.........110.........120.........130.........140.... .....150....
Predicted Secondary structure 
























.



Query SS confidence 




































































.









Query Sequence  RPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI. FDFPLRLTIG
Query Conservation    
  
   









 
    
            
  
  

       
 




 

  

  .
  
   
  
Alig confidence 




.


















.............






























.







..
Template Conservation       .     
 


 

      .............   
   
      
  
 




   

 



 
   
..
Template Sequence  ELSAA. ALKELDLLVVCGGLRTPLK. . . . . . . . . . . . . YPELDRLLNDCAAHGXALGGLWNGAWFLGRAGVLDDYGCS. .
Template Known Secondary structure 

SG.GGTT
S

TT

S
.............
TTT
TTT

TT
..
Template Predicted Secondary structure 

.










.............












..
Template SS confidence 















































































   87..90. ........100.........110 .........120.........130.........140.........150
 
   155....160...... ...170.........180.........190.........200.........210.......
Predicted Secondary structure 


..

















Query SS confidence 











. .


















































Query Sequence  TDIDTAEVLEEM. . GAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE
Query Conservation          
   ..

           
  

 



 
   
    

  

   
     
 
Alig confidence 











..







.....










.............













Template Conservation               
        ..... 
 
  


  .............
  
  
  
 

 
Template Sequence  IHPEQRASLSERSPQTRITPAS. . . . . FTLDRDRLSAA. . . . . . . . . . . . . SPNGAXELXLGLVR
Template Known Secondary structure 

GGG
TT
SSS.....TTS.............S
Template Predicted Secondary structure 







.....



.............



Template SS confidence 
































































   151........160.........170.. .......180... ......190.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions