Job Description P0ABU5 Confidence 99.82% Date Thu Jan 5 11:16:24 GMT 2012 Rank 28 Aligned Residues 175 % Identity 12% Template c3er6D_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative transcriptional regulator protein; PDBTitle: crystal structure of a putative transcriptional regulator2 protein from vibrio parahaemolyticus Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence		K	I	G	V	I	L	S	G	C	G	V	Y	D	G	S	E	I	H	E	A	V	L	T	L	L	A	I	S	R	S	.	.	.	.	.	.	.	G	A	Q	A	V	C	F	A	P	D	K	Q	Q	V	D	V	I	N	H	L	T	G	E	A	M	T	E	T	R	N	V	L	I	E	A	A	R	I	T	R	G	E	I
Query Conservation																																.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.																				.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	V	A	L	A	.	.	.	.	.	P	T	G	R	Y	F	A	S	I	I	S	S	L	E	I	L	E	T	A	A	E	F	A	E	F	Q	G	F	M	T	H	V	V	T	P	N	N	R	P	L	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	G	I	S	V	Q	P	T
Template Known Secondary structure								.	.	.	.	.			T	T	S																		T	T											T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S						S
Template Predicted Secondary structure								.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.						.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.																			.	.	60	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		R	P	L	A	Q	A	D	A	A	E	L	D	A	L	I	V	P	G	G	F	G	A	A	K	N	L	S	N	F	A	S	L	G	S	E	C	T	V	D	R	E	L	K	A	L	A	Q	A	M	H	Q	A	G	K	P	L	G	F	M	C	I	A	P	A	M	L	P	K	I	.	F	D	F	P	L	R	L	T	I	G
Query Conservation																																																																							.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.																																.									.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template Sequence		A	Q	W	Q	S	F	D	F	T	N	I	L	I	I	G	S	I	G	D	P	L	E	S	L	D	K	I	.	.	.	.	.	.	.	.	.	.	.	D	P	A	L	F	D	W	I	R	E	L	H	L	K	G	S	K	I	V	A	I	D	T	G	I	F	V	V	A	K	A	G	L	L	Q	Q	N	K	A	V	.	.
Template Known Secondary structure		S		G	G	G		S			S								S						G	G	G	S	.	.	.	.	.	.	.	.	.	.	.														T	T							T	T									T			T	T					.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.																																									.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.												.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.
Query SS confidence																																					.	.	.	.
Query Sequence		T	D	I	D	T	A	E	V	L	E	E	M	G	A	E	H	V	P	C	P	V	D	D	I	V	V	D	E	D	N	K	I	V	T	T	.	.	.	.	P	A	Y	M	L	A	Q	N	I	A	E	A	A	S	G	I	D	K	L	V	S	R	V	L	V	L
Query Conservation																																					.	.	.	.
Alig confidence																						.	.														.	.	.	.
Template Conservation																						.	.
Template Sequence		M	H	S	Y	F	A	H	L	F	G	E	L	F	P	E	I	M	L	M	T	.	.	E	Q	K	A	L	I	D	G	N	V	Y	L	S	S	G	P	Y	S	H	S	S	V	M	L	E	I	V	E	E	Y	F	G	K	H	T	R	N	L	G	N	Q	F	L
Template Known Secondary structure															T	T	S				T	.	.	T		S					T	T							S	S																										T
Template Predicted Secondary structure																						.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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