Job Description P0ABU5 Confidence 39.44% Date Thu Jan 5 11:16:24 GMT 2012 Rank 177 Aligned Residues 105 % Identity 18% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	G	V	I	L	S	G	C	G	V	Y	D	G	S	E	I	H	E	A	V	L	T	L	L	A	I	S	R	S	G	A	Q	A	V	C	F	A	P	D	K	Q	Q	V	D	V	I	N	H	L	T	G	E	A	M	T	E	T	R	N	V	L	I	E	A	A	R	I	T	R	G	E	I	R	P	L	A	Q	A
Query Conservation
Alig confidence											.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	I	L	V	L	F	Y	G	.	.	.	.	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	D	I	P	E	V	T	L	D
Template Known Secondary structure											.	.	.	.	S	S																	T												S		G	G	G		T	T			G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T	S		B
Template Predicted Secondary structure											.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.															.	.	.	60	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.
Query Sequence		D	A	A	E	L	D	A	L	I	V	P	G	G	F	G	A	A	K	N	L	S	N	F	A	S	L	G	S	E	C	T	V	D	R	E	L	K	A	L	A	Q	A	M	H	Q	.	.	.	.	.	.	.	A	G	K	P	L	G	F	M	C	I	A
Query Conservation																																															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	M	R	W	A	D	G	F	A	I	G	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Y	G	N	M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A
Template Known Secondary structure							S								.	.	.	.	.	.	.	.	.	.	.	.	.		B	T	T	B											T	T					T	T	T	T	T	T	T									B
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.														80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions