Job Description P0ABU5 Confidence 67.41% Date Thu Jan 5 11:16:24 GMT 2012 Rank 121 Aligned Residues 117 % Identity 17% Template c2q4dB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 Resolution 2.15 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.														.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																										.		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	K	I	G	V	I	L	S	G	C	G	V	Y	D	G	S	E	I	H	E	A	V	L	T	L	L	A	I	S	R	S	G	A	Q	A	V	C	F	A	.	P	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	Q	Q	V	D	V	I	N	H	L	T	G	E	A	M	T	E	T	R	N	V	L	I	E
Query Conservation																																										.		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	K	I	C	V	F	C	G	S	H	S	G	H	R	E	V	F	S	D	A	A	I	E	L	G	N	E	L	V	K	R	K	I	D	L	V	Y	G	G	G	S	V	G	L	X	G	L	I	S	R	R	V	Y	E	G	G	L	H	V	L	G	I	I	P	K	A	L	X	P	I	E	I	S	G	E	T	V	G	D
Template Known Secondary structure			S								S				S	S																	T	T									S	S														S	S							B	G	G	G							S	S			S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	I	T	R	G	E	I	R	P	L	A	Q	A	D	A	A	E	L	D	A	L	I	V	P	G	G	F	G	A	A	K	N	L	S	N	F	A	S	L	G	S	E	C	T	V	D	R	E	L	K	A	L	A	Q	A	M	H	Q	A	G	K	P	L
Query Conservation
Alig confidence																						.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	V	V	A	D	X	H	E	R	K	A	A	X	A	Q	E	A	E	A	.	F	I	A	L	P	G	G	Y	G	T	X	E	E	L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	X	I	T	W	S	Q	L	G	I	H	K	K	T	V	G
Template Known Secondary structure					B	S	S											T		S	B	.					S		S										.	.	.	.	.	.	.	.	.	.	.	.	.								T	S
Template Predicted Secondary structure																						.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.														.	.	.	.	.	130	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions