Job Description P0ABU5 Confidence 77.13% Date Thu Jan 5 11:16:24 GMT 2012 Rank 95 Aligned Residues 110 % Identity 15% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	G	V	I	L	S	G	C	G	V	Y	D	G	S	E	I	H	E	A	V	L	T	L	L	A	I	S	R	S	G	A	Q	A	V	C	F	A	P	D	K	Q	Q	V	D	V	I	N	H	L	T	G	E	A	M	T	E	T	R	N	V	L	I	E	A	A	R	I	T	R	G	E	I	R	P	L	A	Q	A
Query Conservation
Alig confidence											.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.																																	.	.	.	.	.	.	.	.
Template Sequence		P	P	T	V	L	V	I	C	G	.	.	.	.	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y	Y	P	K	R	P	N	K	.	.	.	.	.	.	.	.	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X
Template Known Secondary structure		S									.	.	.	.	S	S																T	T								S	S				S	.	.	.	.	.	.	.	.													T	T			B		S	S			S	S
Template Predicted Secondary structure											.	.	.	.																																	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	E	L	D	A	L	I	V	P	G	G	F	G	A	A	K	N	L	S	N	F	A	S	L	G	S	E	C	T	V	D	R	E	L	K	A	L	A	Q	A	M	H	Q	A	G	K	P	L	G	F	M
Query Conservation
Alig confidence								.																.	.	.	.	.	.	.	.	.	.
Template Conservation								.																.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	E	L	Y	E	.	L	V	V	D	A	I	F	G	F	S	F	K	G	D	V	.	.	.	.	.	.	.	.	.	.	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	P	I	A	S	I
Template Known Secondary structure							S	.						S			T	T						.	.	.	.	.	.	.	.	.	.		T	T									T	T		S	S
Template Predicted Secondary structure								.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.											.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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