Job Description P0ABU5 Confidence 41.02% Date Thu Jan 5 11:16:24 GMT 2012 Rank 174 Aligned Residues 176 % Identity 15% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.												.	.
Predicted Secondary structure																																				.																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	I	G	V	I	L	S	G	C	G	V	Y	D	G	S	E	I	H	E	A	V	L	T	L	L	A	I	S	R	S	G	A	Q	.	A	V	C	F	A	P	D	K	Q	Q	V	D	V	I	N	H	L	T	G	E	A	M	T	E	T	R	N	V	L	I	E	A	.	.	.	.	.	.	.	.	.	.	.	A	R
Query Conservation																																				.																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.
Template Sequence		A	K	I	A	L	L	G	A	G	.	.	.	.	.	.	.	.	.	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G
Template Known Secondary structure										S	.	.	.	.	.	.	.	.	.														T									S	S	S	S		S	T					T	S		T	T	T	S														T	T	T						S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.										.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.													.	.	130	.	.	.	.
Predicted Secondary structure							.																																	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	R	G	E	.	I	R	P	L	A	Q	A	D	A	A	E	L	D	A	L	I	V	P	G	G	F	G	A	A	K	N	L	S	N	F	A	S	.	.	L	G	S	E	C	T	V	D	R	E	L	K	A	L	A	Q	A	M	H	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	G	K	P	L	G	F	M
Query Conservation							.																																	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	L	S	E	N	E	I	T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G	L	P	E	P	K	T	D	D	I	F	Q	G	L	T	Q	D	Q	G	F	Y	T	S	K	D	F	L	P	L	V	A	K	S	S	K	A	G	M	C	A	C	H	S	P	L	P	S	I	R	G	A	V	I	V	L
Template Known Secondary structure				B	S	T	T	S	B								T	T																	G	G	G	T	T			T	T	T	T																	T	T	T		S	S									S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.				.	.	.	.		.	150	.	.	.	.										.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure												.	.	.					.							.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.					.							.	.	.	.	.	.	.	.	.
Query Sequence		C	I	A	P	A	M	L	P	K	I	.	.	.	F	D	F	P	.	L	R	L	T	I	G	.	.	.	.	.	.	.	.	.	T	D	I	D	T	A	E	V	L	E	E	M	G	A	E	H	V	P	C	P	V	D	D	I	V	V	D	E	D	N	K	I
Query Conservation												.	.	.					.							.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.					.							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	G	D	T	A	F	D	C	A	T	S	A	L	R	C	G	A	R	R	V	F	L	V	F	R	K	G	F	V	N	I	R	A	V	P	E	E	V	E	L	A	K	E	E	K	C	E	F	L	P	F	L	S	P	R	K	V	I	V	K	G	G	R	I
Template Known Secondary structure				S													T	T		S							S	S		G	G	G			S											T	T						S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions