Job Description P04951 Confidence 97.90% Date Thu Jan 5 10:58:26 GMT 2012 Rank 69 Aligned Residues 146 % Identity 17% Template c3ogzA_ PDB info PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form Resolution 2.03 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.				.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.		.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.
Predicted Secondary structure																		.	.	.									.	.	.																.				.									.	.	.													.	.	.
Query SS confidence																		.	.	.									.	.	.																.				.									.	.	.													.	.	.
Query Sequence		S	F	V	V	I	I	P	A	R	Y	A	S	T	R	L	P	.	.	.	G	K	P	L	V	D	I	N	.	.	.	G	K	P	M	I	V	H	V	L	E	R	A	R	E	S	.	G	A	E	.	R	I	I	V	A	T	D	H	.	.	.	E	D	V	A	R	A	V	E	A	A	G	G	.	.	.	E	V	C	M
Query Conservation																		.	.	.									.	.	.																.				.									.	.	.													.	.	.
Alig confidence																		.	.	.									.	.	.																.				.									.	.	.													.	.	.
Template Conservation
Template Sequence		K	T	V	F	V	L	V	A	G	G	L	G	E	R	L	G	Y	S	S	I	K	V	S	L	P	V	E	T	A	T	N	T	T	Y	L	A	Y	Y	L	R	W	A	Q	R	V	G	G	K	E	V	P	F	V	I	M	T	S	D	D	T	H	D	R	T	L	Q	L	L	R	E	L	Q	L	E	V	P	N	L	H	V
Template Known Secondary structure		G												G	G	G	T					G	G	G	S	B	S		T	T	T			B															T	T									T	T	T											T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		68	.	70	.	.																							.	.	.	.	.	.	.	80	.	.	.											.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	A	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	G	T	E	R	L	A	E	V	V	.	.	.	.	.	.	.	.	.	.	E	K	C	A	F	S	D	D	T	V	I	V	N	V	Q	G	D	E	P	M	I	P	A	T	I	I	R	Q	V	A	D	N
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																																																												.
Template Sequence		L	K	Q	G	Q	V	F	C	F	A	D	S	A	A	H	L	A	L	D	E	T	G	K	L	L	R	K	P	H	G	H	G	D	V	H	S	L	I	Y	N	A	T	V	A	Q	P	L	V	N	D	W	L	A	A	G	Y	E	S	I	V	F	I	Q	D	T	N	A	G	A	T	I	T	I	P	.	I	S	L	A	L
Template Known Secondary structure										B	S	S	T	T			B		B		T	T	S	S	B							T	T										B				B								T	T									T	T	B	T	T							.
Template Predicted Secondary structure																																																																												.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Q	R	Q	V	G	M	A	T	L	A	V	P	I	H	N	A	E	E	A	F	N	P	N	A	V	K	V	V	L	D	A	E	G	Y
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		S	A	E	H	S	L	D	M	N	F	T	C	I	P	R	V	P	K	E	P	I	G	.	.	.	L	L	C	R	T	K	K	N	S	G	D
Template Known Secondary structure					T	T		S										S	S		S	S		.	.	.							S	S	T	T	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions