 |
Job Description | P04951 | Confidence | 19.01% | Date | Thu Jan 5 10:58:26 GMT 2012 |
Rank | 99 | Aligned Residues | 77 |
% Identity | 9% | Template | c3ce9A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:glycerol dehydrogenase; |
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
|
Resolution | 2.37 Å |
|
 |
  |   |
26 | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | K | P | M | I | V | H | V | L | E | R | A | R | E | S | G | A | E | R | I | I | V | A | T | D | H | . |
. |
. |
. |
. |
. |
. |
E | D | V | A | R | A | V | E | A | A | G | G | E | V | C | M | T | R | A | D | H | Q | S | G | T | E | R | L | A | E | V | V | E | K | C | A | F | S | D | D | T | V | I | V | N | V | Q |
Query Conservation |   |
|
|
|
|
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|
|
|
|   |   |   | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |
|   |
|
|
|
|
|
Template Sequence |   |
G | N | N | K | I | Y | N | I | G | Q | I | I | K | K | G | N | F | K | R | V | S | L | Y | F | G | E | G | I | Y | E | L | F | G | E | T | I | E | K | S | I | K | S | S | N | I | E | I | E | A | V | E | T | V | K | N | I | D | F | D | E | I | G | T | N | A | F | K | I | P | A | . |
E | V | D | A | L | I | G | I | G |
Template Known Secondary structure |   |
 | S | S |
| G | G | G |  |  |  |  |  | G | G | G | T |
| S |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  |  |  |  |  |
|
|
| B |  |  |  |  |  |  |  |  | T | T | S |
| T | . | T |
|
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
. | . | . | 90 | . | . | . | . | . |
  |
  |   |
99 | 100 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
G | D | E | P | M |
Query Conservation |   |
  |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
Template Sequence |   |
G | G | K | A | I |
Template Known Secondary structure |   |
S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
  |   |
96 | . | . | . | 100 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|