Job Description P04951 Confidence 99.94% Date Thu Jan 5 10:58:26 GMT 2012 Rank 37 Aligned Residues 235 % Identity 16% Template c2x5sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. Resolution 2.35 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.								.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.
Predicted Secondary structure																		.	.	.	.	.	.	.									.														.																								.	.
Query SS confidence																		.	.	.	.	.	.	.									.														.																								.	.
Query Sequence		F	V	V	I	I	P	A	R	Y	A	S	T	R	L	P	G	.	.	.	.	.	.	.	K	P	L	V	D	I	N	G	.	K	P	M	I	V	H	V	L	E	R	A	R	E	.	S	G	A	E	R	I	I	V	A	T	D	H	E	D	V	A	R	A	V	E	A	A	G	.	.	G	E	V	C	M	T	R	A	D
Query Conservation																		.	.	.	.	.	.	.									.														.																								.	.
Alig confidence																		.	.	.	.	.	.	.									.														.																								.	.
Template Conservation
Template Sequence		M	K	A	L	I	L	A	G	G	S	G	E	R	F	W	P	L	S	T	P	E	T	P	K	Q	F	L	K	L	F	G	N	K	S	L	M	R	W	T	F	E	R	V	L	E	E	M	D	P	K	D	V	I	V	V	T	H	K	D	Y	V	E	R	T	K	K	E	L	P	E	L	P	D	E	N	I	I	A	E	P
Template Known Secondary structure												G	G	G	G	T	T	T		B	T	T	B		G	G	G				B	T	T	B											T	T	T			G	G	G																		T	T	S		G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		H	Q	S	G	T	E	R	L	A	E	V	V	E	K	C	A	F	S	D	D	T	V	I	V	N	V	Q	G	D	E	P	M	I	P	.	.	.	.	A	T	I	I	R	Q	V	A	D	N	L	A	Q	R	Q	V	G	M	A	T	L	A	V	P	I	H	N	A	E	E	A	F	N	P	N	A	V	K	V	V	L	D
Query Conservation																																				.	.	.	.
Alig confidence																		.																		.	.	.	.
Template Conservation																		.
Template Sequence		M	K	K	N	T	A	P	A	C	F	I	G	T	K	L	A	.	D	D	D	E	P	V	L	V	L	P	A	D	H	R	I	P	D	T	K	K	F	W	K	T	V	K	K	A	L	D	A	L	E	K	Y	D	G	L	F	T	F	G	I	V	P	T	R	P	E	T	G	Y	G	Y	I	E	I	G	E	E	L	E	E
Template Known Secondary structure		S													T	T	S	.		T	T								S	S		B																							S									S	S			S	S	S											T
Template Predicted Secondary structure																		.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.													.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		A	E	G	Y	A	L	Y	F	S	R	A	T	I	P	W	D	R	D	R	F	A	E	G	L	E	T	V	G	D	N	F	L	R	H	L	G	I	Y	G	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	A	G	F	I	R	R	Y	V	N	W	Q	P	S	P	L	E	H	I	E	M	L	E	Q	L	R	.	.
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence														.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation														.	.	.	.	.
Template Sequence		G	V	H	K	V	A	Q	F	R	E	K	P	.	.	.	.	.	D	L	E	T	A	K	K	F	V	E	S	G	R	F	L	W	N	S	G	M	F	L	W	K	A	R	E	F	I	E	E	V	K	V	C	E	P	S	I	Y	E	N	L	K	D	V	D	P	R	N	F	E	E	L	K	K	A	Y	E	K	V	P	S
Template Known Secondary structure		T										S		.	.	.	.	.												T																																T	T			S	S												S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
								214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	V	L	W	Y	G	E	K	I	H	V	A	V	A	Q	E	V	P	G	T	G	V	D	T	P	E	D	L	E	R	V	R
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																	.
Template Conservation																								.
Template Sequence		I	S	V	D	Y	A	V	M	E	K	S	K	K	V	R	V	V	K	A	D	F	E	.	W	S	D	L	G	N	W	S	S	V	R	E	I	E
Template Known Secondary structure								T	T	T	T		S									S		.		B				S
Template Predicted Secondary structure																								.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions