Job Description P04951 Confidence 85.22% Date Thu Jan 5 10:58:26 GMT 2012 Rank 82 Aligned Residues 195 % Identity 12% Template c2d7iA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+ Resolution 2.50 Å

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		22	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.		40	.	.	.				.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.											.					.	.	.									.	.	.	.	.	.
Query SS confidence										.	.											.					.	.	.									.	.	.	.	.	.
Query Sequence		V	D	I	N	G	K	P	M	.	.	I	V	H	V	L	E	R	A	R	E	.	S	G	A	E	.	.	.	R	I	I	V	A	T	D	H	.	.	.	.	.	.	E	D	V	A	R	A	V	E	A	A	G	G	E	V	C	M	T	R	A	D	H	Q	S	G	T	E	R	L	A	E	V	V	E	K	C	A	F	S
Query Conservation										.	.											.					.	.	.									.	.	.	.	.	.
Alig confidence										.	.											.					.	.	.									.	.	.	.	.	.																																.	.
Template Conservation																																																																											.	.
Template Sequence		I	P	F	H	N	E	G	W	S	S	L	L	R	T	V	H	S	V	L	N	R	S	P	P	E	L	V	A	E	I	V	L	V	D	D	F	S	D	R	E	H	L	K	K	P	L	E	D	Y	M	A	L	F	P	S	V	R	I	L	R	T	K	K	R	E	G	L	I	R	T	R	M	L	.	.	G	A	S	V	A
Template Known Secondary structure					S	S																	S		G	G	G										S				G	G	G	T								T	T	S	T	T							S	S											.	.
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	T	V	I	V	N	V	Q	G	D	E	P	M	I	P	A	T	I	I	R	Q	V	A	D	N	L	A	Q	R	Q	V	G	M	A	T	L	A	V	P	I	H	N	A	E	E	A	F	N	P	N	A	V	K	V	V	L	D	A	E	G	Y	A	L	Y	F	S	R	A	T	I	P	W	D	R	D	R	F	A	E
Query Conservation
Alig confidence																.																																		.	.	.	.	.	.
Template Conservation																.																																		.	.	.	.	.	.
Template Sequence		T	G	D	V	I	T	F	L	D	S	H	C	E	A	.	N	V	N	W	L	P	P	L	L	D	R	I	A	R	N	R	K	T	I	V	C	P	M	I	D	V	I	D	H	D	D	F	R	.	.	.	.	.	.	Y	E	T	Q	A	G	D	A	M	R	G	A	F	D	W	E	M	Y	Y	K	R	I	P	I	P	P
Template Known Secondary structure			S	S							S	S				.		T	T		S											T	T												T	T	T			.	.	.	.	.	.					T	T	S	S							T	T										T
Template Predicted Secondary structure																.																																		.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		170	.	.	.	.	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																															.								.
Query SS confidence								.	.	.	.	.																															.								.
Query Sequence		G	L	E	T	V	G	.	.	.	.	.	D	N	F	L	R	H	L	G	I	Y	G	Y	R	A	G	F	I	R	R	Y	V	N	W	Q	P	S	P	L	E	H	.	I	E	M	L	E	Q	L	.	R	V	L	W	Y	G	E	K	I	H	V	A	V
Query Conservation								.	.	.	.	.																															.								.
Alig confidence								.	.	.	.	.																															.								.
Template Conservation
Template Sequence		E	L	Q	K	A	D	P	S	D	P	F	E	S	P	V	M	A	G	G	L	F	A	V	D	R	K	W	F	W	E	L	G	G	Y	D	P	G	L	E	I	W	G	G	E	Q	Y	E	I	S	F	K	V	W	M	C	G	G	R	M	E	D	I	P
Template Known Secondary structure		T	T			S	S	T	T	S					S	S			S	S	S											T	T	S	S		T	T			S	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions