 |
Job Description | P04951 | Confidence | 75.68% | Date | Thu Jan 5 10:58:26 GMT 2012 |
Rank | 84 | Aligned Residues | 96 |
% Identity | 13% | Template | c1omxB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; |
PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2)
|
Resolution | 2.40 Å |
|
 |
  |   |
25 | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
. | . | . | . | . | . | . | . | 50 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |
|
|  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | K | P | M | I | V | H | V | L | E | R | A | R | E | S | G | . |
A | E | R | I | I | V | A | T | D | H | . |
. |
. |
. |
. |
. |
E | D | V | A | R | A | V | E | A | A | G | G | E | V | C | M | T | R | A | D | H | Q | S | G | T | E | R | L | A | E | V | V | E | K | C | A | F | S | D | D | T | V | I | V | N | V |
Query Conservation |   |
  |
|
|
|
|
|   |   |   |
|   |   |
|   |   |   |
| . |
|   |   |
|
|
|
|   |   |   | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |   |
|   |
|
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   | . | . | . | . |
|   |
|   |
|   |   |   |
|   |
|
|   |
|   |   |
|
Template Sequence |   |
N | R | T | D | L | L | L | R | L | L | N | H | Y | Q | A | V | P | S | L | H | K | V | I | V | V | W | N | N | V | G | E | K | G | P | E | E | L | W | N | S | L | G | P | H | P | I | P | V | I | F | K | P | Q | T | A | N | K | M | R | . |
. |
. |
. |
N | R | L | Q | V | F | P | E | V | E | T | N | A | V | L | M | V |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T |  |  |  |  |  |  |  |  |
|
| T | T | S |
|
| T |  |  |  |  |  |  | T |
|
|
| S | S |
|  |  |  |  |  |
| S | S |
|
| S | T | . | . | . | . | T | T | T | S |
|
| T | T |
|
| S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | |
|
|
|
. | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
  |
  |   |
98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | G | D | E | P | M | I | P | A | T | I | I | R | Q | V | A | D | N | L | A | Q | R | Q | V | G | M | A | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   | . |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
D | D | D | T | . |
L | I | S | A | Q | D | L | V | F | A | F | S | I | W | Q | Q | F | P | D | Q | I | I | G |
Template Known Secondary structure |   |
| T | T |  | . |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T | S |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
151 | . | . | . | |
. | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|