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Job DescriptionP46068
Confidence99.67%DateThu Jan 5 12:03:56 GMT 2012
Rank15Aligned Residues200
% Identity24%Templatec3kosA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii
Resolution1.83 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.........170.........180.
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Query Sequence  SGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTVLTGNDNVNLQRAGIDLAIYFDDAPSAQLTHHFLMDEEILPVCSPE
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Template Sequence  QEKLKIGVVGTFAIGCLFPLLSDFKRSYPHIDLHISTHNNRVDPAAEGLDYTIRYGGGAWHDTDAQYLCSALXSPLCSPT
Template Known Secondary structure 
T
TT
S


T
S
S

TT

B
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   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  YAQRHALTNTVINLCHCTLLHDRQAWSNDSGTDEWHSWAQHYAVNLPTSSGIGFDRSDLAVIAAMNHIGVAMGRKRLVQK
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Template Sequence  LASQIQTP. . . . . . . . ADILKFPLLRSYRRDEWALWXQTVGEAPPSPTHNVXVFDSSVTXLEAAQAGXGVAIAPVRXFTH
Template Known Secondary structure  TT
SSG........GGGGGS
S
TTTT




TTS
S
TTS
BGGG
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   173......180 .........190.........200.........210.........220.........230.........240....
 
   262.......270.........280.........290.........300.........310
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Query Sequence  RLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFIIWLREQVKTT
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Template Sequence  LLSSERIVQPFLTQIDL. GSYWITRLQSRPETPAXREFSRWLTGVLHKT
Template Known Secondary structure  TTSSB





B
S.
TTS



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   245....250.........260. ........270.........280.........290..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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