Job Description P46068 Confidence 99.34% Date Thu Jan 5 12:03:56 GMT 2012 Rank 33 Aligned Residues 204 % Identity 13% Template c2f7cA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate Resolution 2.16 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		S	G	T	L	T	L	Y	S	R	P	S	I	A	Q	C	W	L	V	P	A	L	G	D	F	T	R	R	Y	P	S	I	S	L	T	V	L	T	G	N	D	N	V	.	.	.	N	L	Q	R	A	G	I	D	L	A	I	Y	F	D	D	A	P	S	A	Q	L	T	H	H	F	L	M	D	E	E	I	L	P	V	C
Query Conservation																																												.	.	.
Alig confidence																																												.	.	.
Template Conservation
Template Sequence		S	Q	T	L	R	I	G	Y	V	S	S	L	L	Y	G	L	L	P	E	I	I	Y	L	F	R	Q	Q	N	P	E	I	H	I	E	L	I	E	C	G	T	K	D	Q	I	N	A	L	K	Q	G	K	I	D	L	G	F	G	R	L	K	I	T	D	P	A	I	R	R	I	V	L	H	K	E	Q	L	K	L	A	I
Template Known Secondary structure											G	G	G	G	G	T	T													T	T	S																		T	T	S		S					S	S				B	T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	E	Y	A	Q	R	H	A	L	T	N	T	V	I	N	L	C	H	C	T	L	L	H	D	R	Q	A	W	S	N	D	S	G	T	D	E	W	H	S	W	A	Q	H	Y	A	V	N	L	P	T	S	S	G	I	G	F	D	R	S	D	L	A	V	I	A	A	M	N	H	I	G	V	A	M	G	R	K	R	L
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		H	K	H	H	H	P	N	.	Q	F	A	A	T	G	V	H	L	S	Q	I	I	D	E	P	M	L	L	Y	P	V	S	Q	K	P	N	F	A	T	F	I	Q	S	L	F	T	E	L	G	L	V	P	S	K	L	T	E	I	R	E	I	Q	L	A	L	G	L	V	A	A	G	E	G	V	C	I	V	P	A	S	A
Template Known Secondary structure			T	T	S		T	T	.	T	S		T	T		B		G	G	G	G	T	T	S								S	S	S	S	S											T	T	T				S						S	S											T	S							G	G	G
Template Predicted Secondary structure									.
Template SS confidence
		169	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	K	R	L	A	S	G	E	L	V	A	P	F	G	D	M	T	V	K	C	H	Q	H	Y	Y	I	T	T	L	P	G	R	Q	W	P	K	I	E	A	F	I	I	W	L	R	E	Q	V	K	T
Query Conservation
Alig confidence					.	.																											.
Template Conservation					.	.																											.
Template Sequence		M	D	I	.	.	G	V	K	N	L	L	Y	I	P	I	L	D	D	D	A	Y	S	P	I	S	L	A	V	R	N	M	.	D	H	S	N	Y	I	P	K	I	L	A	C	V	Q	E	V	F	A	T
Template Known Secondary structure		G	G	S	.	.	S		S	S						B		S	T	T											T	T	.				T
Template Predicted Secondary structure					.	.																											.
Template SS confidence
		248	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions