Job Description P0AFP4 Confidence 99.75% Date Thu Jan 5 11:26:54 GMT 2012 Rank 205 Aligned Residues 211 % Identity 18% Template c2vz8B_ PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase Resolution 3.2 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																													.									.	.	.	.	.	.	.
Query SS confidence																													.									.	.	.	.	.	.	.
Query Sequence		M	Q	K	S	V	L	I	T	G	C	S	S	G	I	G	L	E	S	A	L	E	L	K	R	Q	G	F	.	H	V	L	A	G	C	R	K	.	.	.	.	.	.	.	P	D	D	V	E	R	M	N	S	M	G	F	T	G	V	L	I	D	L	D	S	P	E	S	V	D	R	A	A	D	E	V	I	A	L	T	D
Query Conservation																													.									.	.	.	.	.	.	.
Alig confidence																													.									.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	K	S	Y	V	I	T	G	G	L	G	G	F	G	L	Q	L	A	Q	W	L	R	L	R	G	A	Q	K	L	V	L	T	S	R	S	G	I	R	T	G	Y	Q	A	R	Q	V	R	E	W	R	R	Q	G	V	Q	V	L	V	S	T	S	N	A	S	S	L	D	G	A	R	S	L	I	T	E	A	T	Q	L
Template Known Secondary structure		T	T							S	T	T	S													T	T									S	S				S													T	T										S	S	S
Template Predicted Secondary structure
Template SS confidence
		1883	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	L	Y	G	I	F	N	N	A	G	F	G	M	Y	G	P	L	S	T	I	S	R	A	Q	M	E	Q	Q	F	S	A	N	F	F	G	A	H	Q	L	T	M	R	L	L	P	A	M	L	P	H	G	E	G	R	I	V	M	T	S	S	V	M	G	L	I	S	T	P	G	R	G	A	Y	A	A	S	K	Y	A
Query Conservation
Alig confidence																																																						.	.
Template Conservation																																																						.	.
Template Sequence		G	P	V	G	G	V	F	N	L	A	M	V	L	R	D	A	V	L	E	N	Q	T	P	E	F	F	Q	D	V	S	K	P	K	Y	S	G	T	A	N	L	D	R	V	T	R	E	A	C	P	E	L	D	.	.	Y	F	V	I	F	S	S	V	S	C	G	R	G	N	A	G	Q	A	N	Y	G	F	A	N	S	A
Template Known Secondary structure		S																	S	T	T			T	T						T	T	T	T																T	T			.	.												T	T		T	T
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		1963	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.			.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		L	E	A	W	S	D	A	L	R	M	E	L	R	H	S	G	I	K	V	S	L	I	E	P	G	P	I	.	R	T	R	F	T	D	N	V	N	Q	T	Q	S	D	K	P	V	E	N	P	G	I	A	A	R	F	T	L	G	P	E	A	V	V	D	K	V	R	H	A	F	I	S	E	K	P	K	M
Query Conservation																													.
Alig confidence													.	.	.	.													.										.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	R	I	C	E	K	R	R	H	D	.	.	.	.	G	L	P	G	L	A	V	Q	W	G	A	I	G	D	V	G	V	V	L	E	N	D	.	.	.	.	.	.	.	.	.	.	T	V	I	G	G	T	L	P	Q	R	I	A	S	C	L	E	V	L	D	L	F	L	S	Q	P	H	P	V	L
Template Known Secondary structure												T	.	.	.	.	T	S										B		T	T	S	T	T	T				.	.	.	.	.	.	.	.	.	.			T	T	S				B														T		S		S
Template Predicted Secondary structure													.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2041	.	.	.	.	.	.	.	.	2050	.					.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.											.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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