Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFP4
Confidence99.13%DateThu Jan 5 11:26:54 GMT 2012
Rank279Aligned Residues230
% Identity11%Templatec2hunB_
PDB info PDB header:lyaseChain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3
Resolution2.07 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40.........50.........60.........70.........80.........90..
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  VMQKSVLITGCSSGIGLESALELKRQGFHVLAGCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIF
Query Conservation 
 

 










  

  

  
  
    
    
             
                          
Alig confidence 















































































Template Conservation 
  












  

  

  
  
 
                       
     
                  
Template Sequence  MHSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVV
Template Known Secondary structure 
TT
TTTS
TT



TT

GGGGTTTTT
TT

TT

S
Template Predicted Secondary structure 









































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   93......100.........110.........120.........130.........140..... ....150.........160........
Predicted Secondary structure 






































....




Query SS confidence 




















































. . . .






















Query Sequence  NNAGFGMYGPLSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTS. . . . SVMGLISTPGRGAYAASKYALEA
Query Conservation                                                      
....
            
  

 
   
Alig confidence 




















































....






















Template Conservation    
                                                                             
Template Sequence  HLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDM
Template Known Secondary structure 






T
TTSGGGG


SSS
B
TTS




S
Template Predicted Secondary structure 



















































Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   169170.........180.........190........ .200.........210.........220.........230.........
Predicted Secondary structure 









.........














Query SS confidence 





























. . . . . . . . .








































Query Sequence  WSDALRMELRHSGIKVSLIEPGPIRTRFTD. . . . . . . . . NVNQTQSDKPVENPGIAARFTLGPEAVVDKVRHAFISEKPK
Query Conservation      
  
    



  
 

 
 
    .........                       

 

  
  
       
Alig confidence 







...


















.........








































Template Conservation          ...              
                                    
 
 
             
Template Sequence  LVLGWTRT. . . YNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGESR
Template Known Secondary structure  ...TT

STT

TTSTTT

TTS



TT
Template Predicted Secondary structure  ...

































Template SS confidence 















































































   161....... .170.........180.........190.........200.........210.........220.........230.......
 
   240.....
Predicted Secondary structure 

Query SS confidence 





Query Sequence  MRYPVT
Query Conservation        
Alig confidence 





Template Conservation      
 
Template Sequence  EIYNIS
Template Known Secondary structure 

Template Predicted Secondary structure 
Template SS confidence 





   238.240...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions