Job Description Q57049 Confidence 0.86% Date Thu Jan 5 12:37:12 GMT 2012 Rank 64 Aligned Residues 48 % Identity 21% Template c3cueH_ PDB info PDB header:protein transport Chain: H: PDB Molecule:transport protein particle 31 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab2 ypt1p Resolution 3.70 Å

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		2	.	.	.		.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure						.							.
Query SS confidence						.							.
Query Sequence		E	G	W	R	.	V	L	N	K	L	A	.	N	L	R	I	D	Q	N	K	S	G	T	T	A	F	H	A	G	K	F	F	R	F	P	A	F	F	S	D	P	T	V	N	S	L	F	S	H	T	E	A	F	S	Q	F	F	G	G
Query Conservation						.							.
Alig confidence						.							.																			.														.	.	.	.	.	.	.	.
Template Conservation																																.														.	.	.	.	.	.	.	.
Template Sequence		T	L	W	S	Y	L	F	N	H	V	S	D	D	L	V	K	S	S	E	R	D	N	E	Y	M	I	V	D	N	F	.	P	T	L	T	Q	F	I	P	G	E	N	V	S	.	.	.	.	.	.	.	.	C	E	Y	F	V	C	G
Template Known Secondary structure							T	T	S	S			S						S	S		T	T							S	S	.		S	S	S		S	S		T	T				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.														.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.									.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions