Job Description P0ABZ4 Confidence 25.94% Date Thu Jan 5 11:16:45 GMT 2012 Rank 187 Aligned Residues 111 % Identity 18% Template c3ef0A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd2 phosphatase Resolution 2.10 Å

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		17	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40																												.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		A	D	V	I	A	K	A	E	N	I	R	L	.	L	I	L	D	V	D	G	V	L	S	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	Y	M	G	N	N	G	E	.	.	.	E	L	K	A	F	N	V	R	D	G	Y	G	I	R	C	A
Query Conservation														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		E	N	V	K	R	L	R	Q	E	K	R	L	S	L	I	V	D	L	D	Q	T	I	I	H	A	T	V	D	P	T	V	G	E	W	M	S	D	P	G	N	V	N	Y	D	V	L	R	D	V	R	S	F	N	L	Q	E	G	P	S	G	Y	T	S	C	Y	Y	I	K	F	R	P	G	L	A	Q	F	L	Q	K	I
Template Known Secondary structure											T									B	T	T	T							T							T		T	T	S	T	T	T	G	G	G	T	T									T	T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		L	T	S	D	I	E	V	A	I	I	T	G	R	K	A	K	L	V	E	D	R	C	A	T	L	G	I	T	.	.	.	.	.	.	H	L	Y	Q	G	Q	S	N	K	L	I	A	F	S	D	L	L	E	K	L	A	I	A	P	E	N	V	A	Y	V	G	D	D	L	I
Query Conservation																														.	.	.	.	.	.
Alig confidence					.																									.	.	.	.	.	.
Template Conservation					.
Template Sequence		S	E	L	.	Y	E	L	H	I	Y	T	M	G	T	K	A	Y	A	K	E	V	A	K	I	I	D	P	T	G	K	L	F	Q	D	R	V	L	S	R	D	D	S	G	S	L	A	Q	K	S	L	R	R	L	F	P	C	D	T	S	M	V	V	V	I	D	D	R	G	D
Template Known Secondary structure			T	T	.								S	S														T	T	S		S	S	S	S					T	T	T	S	S		S	S				G	G	G	T		S	S			T	T						S		S	G
Template Predicted Secondary structure					.
Template SS confidence
		234	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions