Job Description P0ABZ4 Confidence 98.25% Date Thu Jan 5 11:16:45 GMT 2012 Rank 136 Aligned Residues 114 % Identity 22% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		27	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.													.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	L	I	L	D	V	D	G	V	L	.	.	S	D	G	L	I	Y	M	G	N	N	G	E	E	L	K	A	F	N	V	R	D	G	Y	G	I	R	C	A	L	T	S	D	I	E	V	A	I	I	T	G	.	.	.	.	.	.	.	.	.	.	.	.	R	K	A	K	L	V	E	D	R	C	A	T	L	G	I
Query Conservation													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	A	A	F	D	L	D	G	T	L	I	T	T	R	S	G	K	V	F	P	T	S	P	S	D	W	R	I	L	Y	P	E	I	P	K	K	L	Q	E	L	A	A	E	G	Y	K	L	V	I	F	T	N	Q	X	G	I	G	R	G	K	L	P	A	E	V	F	K	G	K	V	E	A	V	L	E	K	L	G	V
Template Known Secondary structure								S	B	T	T	T				S	S		S	S	S		S	S	T	T					S		T	T											T	T														T	T	S	S																	T	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		93	.	.	.	.	.	.								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.																		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure									.	.	.	.	.	.	.																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	H	L	Y	Q	G	Q	.	.	.	.	.	.	.	S	N	K	L	I	A	F	S	D	L	L	E	K	L	A	.	.	.	.	I	A	P	E	N	V	A	Y	V	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	I	D	W	P	V	M	E	K	V	G	L	S	V
Query Conservation									.	.	.	.	.	.	.																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	Q	V	L	V	A	T	H	A	G	L	N	R	K	P	V	S	G	X	W	D	H	L	Q	E	Q	A	N	E	G	I	P	I	S	V	E	D	S	V	F	V	G	D	A	A	G	R	L	A	N	W	A	P	G	R	K	K	K	D	F	S	C	A	D	R	L	F	A	L	N	V	G	L	P	F
Template Known Secondary structure										S	S	S	S	S	S	T	T	S	T									T	T	S	S	S					S	T	T						S		S		B		T	T	S	S	T	T			S			S												T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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