Job Description P24182 Confidence 100.00% Date Thu Jan 5 11:41:00 GMT 2012 Rank 28 Aligned Residues 360 % Identity 18% Template c3orqA_ PDB info PDB header:ligase,biosynthetic protein Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide synthetase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthetase from2 staphylococcus aureus complexed with adp Resolution 2.23 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	I	V	I	A	N	R	G	E	I	A	L	R	I	L	R	A	C	K	E	L	G	I	K	T	V	A	V	H	S	S	A	D	R	D	L	K	H	V	L	L	A	D	E	T	V	C	I	G	P	A	P	S	V	K	S	Y	L	N	I	P	A	I	I	S	A	A	E	I	T	G	A	V	A	I	H	P	G	Y
Query Conservation
Alig confidence																															.	.																			.	.	.	.	.	.	.															.	.
Template Conservation																															.	.																			.	.	.	.	.	.	.															.	.
Template Sequence		A	T	I	G	I	I	G	G	G	Q	L	G	K	X	X	A	Q	S	A	Q	K	X	G	Y	K	V	V	V	L	.	.	D	P	S	E	D	C	P	C	R	Y	V	A	H	E	F	I	Q	A	.	.	.	.	.	.	.	K	Y	D	D	E	K	A	L	N	Q	L	G	Q	K	.	.	C	D	V	I	T	Y	E	F
Template Known Secondary structure										S													T	T							.	.		S		T	T		T	T	G	G	G	S	S						.	.	.	.	.	.	.		T	T												.	.		S					S	S
Template Predicted Secondary structure																															.	.																			.	.	.	.	.	.	.															.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.								.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	L	S	E	N	A	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	S	D	G	P	L	G	D	D	M	D	K	N	R	A	I	A	K	R	I	G	Y	P	V	I	I	K	A	S	G
Query Conservation
Alig confidence							.													.	.	.																																.	.	.
Template Conservation							.													.	.	.																																.	.	.
Template Sequence		E	N	I	S	A	.	Q	Q	L	K	L	L	C	E	K	Y	N	I	.	.	.	P	Q	G	Y	Q	A	I	Q	L	L	Q	D	R	L	T	E	K	E	T	L	K	S	A	G	T	K	V	V	P	F	I	.	.	.	S	V	K	E	S	T	D	I	D	K	A	I	E	T	L	G	Y	P	F	I	V	K	T	R	F
Template Known Secondary structure		T	T	S			.										S			.	.	.	T	T	T	T								S											T	T			B					.	.	.				S	S	T									T		S	S						S	S
Template Predicted Secondary structure							.													.	.	.																																.	.	.
Template SS confidence
		79	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
			163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L	A	E	R	D	C	S	M	Q	R	R	H	Q	K	V	V	E
Query Conservation		.
Alig confidence		.																								.	.	.	.	.	.	.	.																																							.
Template Conservation																										.	.	.	.	.	.	.	.																																							.
Template Sequence		G	G	Y	D	G	K	G	Q	V	L	I	N	N	E	K	D	L	Q	E	G	F	K	L	I	.	.	.	.	.	.	.	.	E	T	S	E	C	V	A	E	K	Y	L	N	I	K	K	E	V	S	L	T	V	T	R	G	N	N	N	Q	I	T	F	F	P	L	Q	E	N	E	.	H	R	N	Q	I	L	F	K	T
Template Known Secondary structure		S			T	T	T	T						S	T	T	S									.	.	.	.	.	.	.	.	T	T	S																						G	G	G												.			T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.																																							.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.									.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	.	N	G	E	F	Y	F	I	E	M	N	T	R	I	Q	V	E	H	P	V	T	E	M	I	T	G	V	D	L	I	K	E	Q	L	R	I	A	A	G	Q	P
Query Conservation																																									.
Alig confidence								.	.	.																															.
Template Conservation								.	.	.
Template Sequence		I	V	P	A	R	I	.	.	.	D	K	T	A	E	A	K	E	Q	V	N	K	I	I	Q	S	I	H	F	I	G	T	F	T	V	E	F	F	I	D	S	N	N	Q	L	Y	V	N	E	I	A	P	R	P	H	N	S	G	H	Y	S	I	E	A	C	D	Y	S	Q	F	D	T	H	I	L	A	V	T	G	Q	S
Template Known Secondary structure				S		S	S	.	.	.															T	T	S														T	T										S	S			G	G	G	T	T					B	S	S											T	T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		223	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	I	K	Q	E	E	V	H	V	R	G	H	A	V	E	C	R	I	N	A	E	D	P	N	T	F	L	P	S	P	G	K	I	T	R	F	H	A	P	G	G	F	G	V	R	W	E	S	H	I	Y	A	G	Y	T	V	P	P	Y	Y	D	S	M	I	G	K	L	I	C	Y	G	E	N	R	D	V	A	I	A
Query Conservation
Alig confidence					.	.	.																								.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation					.	.	.																								.	.	.	.	.	.	.	.																							.	.	.	.
Template Sequence		L	P	N	.	.	.	S	I	E	L	L	K	P	A	V	X	X	N	L	L	G	K	D	L	D	L	L	E	N	.	.	.	.	.	.	.	.	E	F	N	E	H	P	E	W	H	L	H	I	Y	G	K	S	E	R	K	D	S	R	.	.	.	.	K	X	G	H	X	T	V	L	T	N	D	V	N	Q	T	E	Q
Template Known Secondary structure				S	.	.	.				B	S	S																G	G	.	.	.	.	.	.	.	.	G	G	G	G		G	G	G								S	S			T	T	S	.	.	.	.										S
Template Predicted Secondary structure					.	.	.																								.	.	.	.	.	.	.	.																							.	.	.	.
Template SS confidence
		300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.									.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		401	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	K	N	A	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	X	Y	A	K	F	E
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions