Job Description P24182 Confidence 100.00% Date Thu Jan 5 11:41:00 GMT 2012 Rank 37 Aligned Residues 293 % Identity 18% Template c3lwbA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		D	K	I	V	I	A	N	R	G	E	I	.	.	.	.	A	L	R	I	L	R	A	C	K	E	L	G	I	K	T	V	A	V	H	S	S	A	D	R	D	L	K	H	V	L	L	A	D	E	T	V	C	I	G	P	A	P	S	V	K	S	Y	L	N	I	P	A	I	I	S	A	A	E	I	T	G	A	V	A	I
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	V	A	V	V	F	G	G	A	I	S	C	V	S	A	G	S	I	L	R	N	L	D	S	R	R	F	D	V	I	A	V	G	I	T	P	A	G	S	W	V	L	T	D	A	N	V	S	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	A	G	E	V	L	E	S	V	D	V	V
Template Known Secondary structure																								S		T	T	T										T	T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T		S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																	.	.	.	.	.	.	.	.	70	.	.	.	.
		79	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		H	P	G	Y	G	F	L	S	.	E	N	A	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	S	D	G	P	L	G	D	D	M	D	K	N	R	A	I	A	K	R	I	G	Y	P	V	I
Query Conservation										.
Alig confidence										.																																																								.
Template Conservation																																																																		.
Template Sequence		F	P	V	L	H	G	P	Y	G	E	D	G	T	I	Q	G	L	L	E	L	A	G	V	P	Y	V	G	A	G	V	L	A	S	A	V	G	M	D	K	E	F	T	K	K	L	L	A	A	D	G	L	P	V	G	A	Y	A	V	L	R	P	P	R	S	.	T	L	H	R	Q	E	C	E	R	L	G	L	P	V	F
Template Known Secondary structure								T	T														T			B	S	S	S										B											T	T			B								T	T			.												S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L	A	E	R	D	C	S	M	Q	R	R	H	Q
Query Conservation
Alig confidence																																	.	.	.	.	.	.													.
Template Conservation																																	.	.	.	.	.	.													.
Template Sequence		V	K	P	A	R	G	G	S	S	I	G	V	S	R	V	S	S	W	D	Q	L	P	A	A	V	A	R	A	R	R	H	.	.	.	.	.	.	D	P	K	V	I	V	E	A	A	I	S	G	.	R	E	L	E	C	G	V	L	E	M	P	D	G	T	L	E	A	S	T	L	G	E	I	R	V	A	G	V	R	G
Template Known Secondary structure					S	B		S	T	T	T	T						S	G	G	G										T	T	.	.	.	.	.	.		S	S										.											T	T	S														S	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.													.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.							.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		238	.	240															.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.					.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.
Query Sequence		K	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	N	G	E	F	Y	F	I	E	M	N	T	R	I	Q	V	E	.	.	.	.	H	P	V
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.
Template Conservation
Template Sequence		R	E	D	S	F	Y	D	F	A	T	K	Y	L	D	D	A	A	E	L	D	V	P	A	K	V	D	D	Q	V	A	E	A	I	R	Q	L	A	I	R	A	F	A	A	I	D	C	R	G	L	A	R	V	D	F	F	L	T	D	D	G	P	V	I	N	E	I	N	T	M	P	G	F	T	T	I	S	M	Y	P	R
Template Known Secondary structure		S			S	S	S							T		T	T					S	S																						T	T			S										T	T									S	S				S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		T	E	M	I	T	G	V	D	L	I	K	E	.	.	.	Q	L	R	I	A	A	G	Q
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		M	W	A	A	S	G	V	D	Y	P	T	L	L	A	T	M	I	E	T	T	L	A	R
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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