Phyre 2 alignment of P24182 with c3k3pA

Job Description P24182
Confidence 100.00% Date Thu Jan 5 11:41:00 GMT 2012

Rank 45 Aligned Residues 290

% Identity 17% Template c3k3pA_

PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans

Resolution 2.23 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.										.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.
Query Sequence	D	K	I	V	I	A	N	R	G	E	.	.	.	.	.	.	.	.	.	I	A	L	R	I	L	R	A	C	K	E	L	G	I	K	T	V	A	V	H	S	S	A	D	R	D	L	K	H	V	L	L	A	D	E	T	V	C	I	G	P	A	P	S	V	K	S	Y	L	N	I	P	A	I	I	S	A	A	E	I	T
Query Conservation											.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																																														.
Template Conservation																																																																	.
Template Sequence	E	T	L	V	L	L	Y	G	G	R	S	A	E	R	D	V	S	V	L	S	A	E	S	V	M	R	A	I	N	Y	D	N	F	L	V	K	T	Y	F	I	T	Q	A	G	D	F	I	K	T	Q	E	F	D	S	Q	P	S	D	K	L	M	T	N	D	.	T	I	I	A	S	Q	K	I	K	P	S	D	I	Y	E
Template Known Secondary structure										S	S	T	T															S		T	T	T										T	T	S									S	S									T	T	.	S			G	G	G				G	G	G	G
Template Predicted Secondary structure																																																																	.
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	74	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150
Predicted Secondary structure														.																																									.																					.
Query SS confidence														.																																									.																					.
Query Sequence	G	A	V	A	I	H	P	G	Y	G	F	L	S	.	E	N	A	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	.	G	V	P	C	V	P	G	S	D	G	P	L	G	D	D	M	D	K	N	R	.	A	I	A	K
Query Conservation														.																																									.																					.
Alig confidence														.																																									.																					.
Template Conservation
Template Sequence	E	E	A	V	V	F	P	V	L	H	G	P	M	G	E	D	G	S	I	Q	G	F	L	E	V	L	K	M	P	Y	V	G	T	N	I	L	S	S	S	V	A	M	D	K	I	T	T	N	Q	V	L	E	S	A	T	T	I	P	Q	V	A	Y	V	A	L	I	E	G	E	P	L	E	S	K	L	A	E	V	E	E
Template Known Secondary structure	T	T									S	T	T	T	S	S	S									T	T			B	S	S																											B								T	T	S
Template Predicted Secondary structure
Template SS confidence
	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

	151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence	R	I	G	Y	P	V	I	I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L	A	E	R	D	C
Query Conservation
Alig confidence												.	.	.	.	.	.																						.	.	.	.	.	.																		.
Template Conservation												.	.	.	.	.	.																						.	.	.	.	.	.																		.
Template Sequence	K	L	I	Y	P	V	F	V	K	P	A	.	.	.	.	.	.	N	I	S	K	A	E	N	R	T	D	L	K	Q	A	I	A	L	A	L	K	Y	.	.	.	.	.	.	D	S	R	V	L	I	E	Q	G	V	D	A	R	E	I	E	V	.	G	I	L	G	N	T	D	V	K	T	T	L	P	G	E	I	V	T
Template Known Secondary structure				S	S							.	.	.	.	.	.						S	S															.	.	.	.	.	.		S										S						.					S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.																						.	.	.	.	.	.																		.
Template SS confidence
	165	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.											.	.
Query SS confidence																																																			.											.	.
Query Sequence	S	M	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	.	N	G	E	F	Y	F	I	E	M	N	.	.	T	R	I	Q	V	E	H	P	V	T	E	M	I	T	G	V	D
Query Conservation																																																			.											.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.																																								.											.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	M	A	I	P	A	E	I	D	P	V	I	V	E	K	M	R	D	Y	A	A	T	A	F	R	T	L	G	C	C	G	L	S	R	C	D	F	F	L	T	E	D	G	K	V	Y	L	N	E	L	N	T	M	P	G	F	T	S	M	Y	P	L	L	W	E	N	M	G	L	S
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.			S	S																						T	T													T	T										S	S														T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
												255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

	308	.	310	.				.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence	L	I	K	E	.	.	.	Q	L	R	I	A	A
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence	Y	S	V	L	I	E	E	L	V	S	L	A	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	326	.	.	.	330	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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