Job Description P24182 Confidence 100.00% Date Thu Jan 5 11:41:00 GMT 2012 Rank 41 Aligned Residues 297 % Identity 18% Template c3e5nA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.										.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		D	K	I	V	I	A	N	R	G	E	.	.	.	.	.	.	.	.	.	I	A	L	R	I	L	R	A	C	K	E	L	G	I	K	T	V	A	V	H	S	S	A	D	R	D	L	K	H	V	L	L	A	D	E	T	V	C	I	G	P	A	P	S	V	K	S	Y	L	N	I	P	A	I	I	S	A	A	E	I	T
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																																			.
Template Conservation																																																																							.
Template Sequence		I	R	V	G	L	I	F	G	G	K	S	A	E	H	E	V	S	L	Q	S	A	R	N	I	L	D	A	L	D	P	Q	R	F	E	P	V	L	I	G	I	D	K	Q	G	Q	W	H	V	N	D	P	D	S	F	L	L	H	A	D	D	P	A	R	I	A	L	H	R	S	.	G	R	G	V	A	L	L	P	G	A
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S							G	G	G	S			S	T	T		T	T	T							.								T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.
		74	.	.	.	.	.	80	.	.															.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	V	A	I	H	P	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	L	S	E	N	A	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	S	D	G	P	L	G
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	Q	Q	L	R	P	I	Q	Q	A	L	A	Q	I	D	V	V	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	L	L	R	M	A	N	L	P	F	V	G	S	G	V	L	G	S	A	V	A	M	D	K	D	M	A	K	R	V	L	R	D	A	R	L	A	V	A	P	F	V	C	F	D	R	H
Template Known Secondary structure		S	S	S													S								S					S	S									T	T			B	S	S											B											T	T			B
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		D	.	D	M	D	K	N	R	A	I	A	K	R	I	G	Y	P	V	I	I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G
Query Conservation			.
Alig confidence			.																																														.	.	.	.	.	.																.
Template Conservation																																																	.	.	.	.	.	.																.
Template Sequence		T	A	A	H	A	D	V	D	T	L	I	A	Q	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	Q	V	R	T	A	D	A	F	A	A	A	L	A	L	A	.	.	.	.	.	.	L	A	Y	D	H	K	V	L	V	E	A	A	V	A	G	.	R	E	I	E	C	A	V	L	G	N	A
Template Known Secondary structure				T	T												S	S						S	B	S		S	S	T	T						S	G	G	G									.	.	.	.	.	.	T	T	T		S										S	.										S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.																.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																																																.																	.
Query SS confidence																																																																.																	.
Query Sequence		Q	G	N	A	I	Y	L	A	E	R	D	C	S	M	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	.	N	G	E	F	Y	F	I	E	M	N	T	R	I	Q	V	E	.
Query Conservation																																																																.																	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																																								.																	.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	H	A	S	V	C	G	E	V	V	V	E	.	.	.	.	.	.	.	.	.	.	I	V	I	P	A	D	I	D	A	Q	T	Q	Q	R	I	Q	Q	I	A	V	Q	A	Y	Q	A	L	G	C	A	G	M	A	R	V	D	V	F	L	C	A	D	G	R	I	V	I	N	E	V	N	T	L	P	G	F	T	R
Template Known Secondary structure		S													.	.	.	.	.	.	.	.	.	.			S	S		S	S																				T			S										T	T										S	S				S	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250											.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
					297	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.
Predicted Secondary structure		.	.	.																.	.	.
Query SS confidence		.	.	.																.	.	.
Query Sequence		.	.	.	H	P	V	T	E	M	I	T	G	V	D	L	I	K	E	.	.	.	Q	L	R	I	A	A
Query Conservation		.	.	.																.	.	.
Alig confidence		.	.	.																.	.	.
Template Conservation
Template Sequence		I	S	V	Y	P	K	L	W	Q	A	S	G	L	D	Y	R	G	L	I	T	R	L	I	E	L	A	L
Template Known Secondary structure		T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions