Job Description P24182 Confidence 99.84% Date Thu Jan 5 11:41:00 GMT 2012 Rank 71 Aligned Residues 226 % Identity 14% Template c2p0aA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin-3; PDBTitle: the crystal structure of human synapsin iii (syn3) in complex with2 amppnp Resolution 1.90 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		G	A	V	A	I	H	P	G	Y	G	F	L	S	E	N	A	.	.	.	.	.	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	S	D	G	P	L	G	D	D	M	D	K	N	R	A	I
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.																	.
Template Conservation																																							.
Template Sequence		K	P	D	F	I	L	V	R	Q	H	A	Y	S	M	A	L	G	E	D	Y	R	S	L	V	I	G	L	Q	Y	G	G	L	P	A	V	N	S	.	L	Y	S	V	Y	N	F	C	S	K	P	W	V	F	S	Q	L	I	K	I	F	H	S	L	G	P	E	K	F	P	L	V	E	Q	T	F	F	P	N	H	K	P
Template Known Secondary structure				S						S		S			G	G	G	T													T	T					S		.							T	T																		T	T	T	S		B							S	S	S	T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		149		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		A	.	K	R	I	G	Y	P	V	I	I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L	A	E
Query Conservation			.
Alig confidence			.																																								.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		M	V	T	A	P	H	F	P	V	V	V	K	L	G	H	A	H	A	G	M	G	K	I	K	V	E	N	Q	L	D	F	Q	D	I	T	S	V	V	A	M	A	.	.	.	.	.	.	K	T	Y	A	T	T	E	A	F	I	D	S	K	Y	D	I	R	I	Q	K	I	G	S	N	Y	K	A	Y	M	R	T	S	I
Template Known Secondary structure						S	S	S	S						S	S			T	T	T	T						S															.	.	.	.	.	.	T																					T	T										S
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																							.											.	.	.
Query SS confidence																																																							.											.	.	.
Query Sequence		R	D	C	S	M	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	.	N	G	E	F	Y	F	I	E	M	N	.	.	.	T	R	I	Q	V	E	H	P	V	T	E	M	I
Query Conservation																																																							.											.	.	.
Alig confidence																					.	.	.	.	.	.	.																												.											.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		S	G	N	W	K	A	N	T	G	S	A	M	L	E	Q	V	A	M	T	.	.	.	.	.	.	.	E	R	Y	R	L	W	V	D	S	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	S	K	D	G	R	D	Y	I	I	E	V	M	D	S	S	M	P	L	I	G	E	H	V	E	E	D	R	Q
Template Known Secondary structure		S	S		S	S	T	T	S	S	S										.	.	.	.	.	.	.											T	T	G	G	G			S										T	T	S										T	T					G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.								330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		304	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	D	L	I	K	E	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	A	D	L	V	V	S	K	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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