Job Description P24182 Confidence 100.00% Date Thu Jan 5 11:41:00 GMT 2012 Rank 36 Aligned Residues 303 % Identity 17% Template c2i80B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies Resolution 2.19 Å

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		3	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70
Predicted Secondary structure													.	.	.	.	.	.	.	.	.																																																		.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.																																																		.	.	.
Query Sequence		D	K	I	V	I	A	N	R	G	E	I	.	.	.	.	.	.	.	.	.	A	L	R	I	L	R	A	C	K	E	L	G	I	K	T	V	A	V	H	S	S	A	D	R	D	L	K	H	V	L	L	A	D	E	T	V	C	I	G	P	A	P	S	V	K	S	Y	L	N	.	.	.	I	P	A	I	I	S	A	A
Query Conservation													.	.	.	.	.	.	.	.	.																																																		.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.																																																		.	.	.
Template Conservation
Template Sequence		E	N	I	C	I	V	F	G	G	K	S	A	E	H	E	V	S	I	L	T	A	Q	N	V	L	N	A	I	D	K	D	K	Y	H	V	D	I	I	Y	I	T	N	D	G	D	W	R	K	Q	N	N	I	T	A	E	I	K	S	T	D	E	L	H	L	E	N	G	E	A	L	E	I	S	Q	L	L	K	E	S	S
Template Known Secondary structure											S	S	T	T															S		T	T	T										T	T	S										S					G	G	G	G	S		S					S										T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.
Predicted Secondary structure																		.																																																							.	.	.	.
Query SS confidence																		.																																																							.	.	.	.
Query Sequence		E	I	T	G	A	V	A	I	H	P	G	Y	G	F	L	S	.	E	N	A	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	S	D	G	P	L	G	D	.	.	.	.	D	M	D	K	N
Query Conservation																		.																																																							.	.	.	.
Alig confidence																		.																																																							.	.	.	.
Template Conservation
Template Sequence		S	G	Q	P	Y	D	A	V	F	P	L	L	H	G	P	N	G	E	D	G	T	I	Q	G	L	F	E	V	L	D	V	P	Y	V	G	N	G	V	L	S	A	A	S	S	M	D	K	L	V	M	K	Q	L	F	E	H	R	G	L	P	Q	L	P	Y	I	S	F	L	R	S	E	Y	E	K	Y	E	H	N	I	L
Template Known Secondary structure		T	S	S			S						S		B	T	T	T	B	S	S										T			B	S	S																							T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I	A	K	R	I	G	Y	P	V	I	I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L
Query Conservation
Alig confidence																																													.	.	.	.	.	.													.
Template Conservation																																													.	.	.	.	.	.													.
Template Sequence		K	L	V	N	D	K	L	N	Y	P	V	F	V	K	P	A	N	L	G	S	S	V	G	I	S	K	C	N	N	E	A	E	L	K	E	G	I	K	E	A	F	Q	F	.	.	.	.	.	.	D	R	K	L	V	I	E	Q	G	V	N	A	.	R	E	I	E	V	A	V	L	G	N	D	Y	P	E	A	T	W	P
Template Known Secondary structure										S	S						T	T		S	S		T	T					S	S													T	T	.	.	.	.	.	.		S											.										S	S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.													.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.					.	.	300
Predicted Secondary structure																																																									.																		.	.	.	.
Query SS confidence																																																									.																		.	.	.	.
Query Sequence		A	E	R	D	C	S	M	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	.	N	G	E	F	Y	F	I	E	M	N	T	R	I	Q	V	E	H	.	.	.	.	P	V	T
Query Conservation																																																									.																		.	.	.	.
Alig confidence						.	.	.	.													.																																			.																		.	.	.	.
Template Conservation						.	.	.	.													.
Template Sequence		G	E	V	V	.	.	.	.	K	D	V	A	F	V	Q	L	Q	I	P	A	.	D	L	D	E	D	V	Q	L	T	L	R	N	M	A	L	E	A	F	K	A	T	D	C	S	G	L	V	R	A	D	F	F	V	T	E	D	N	Q	I	Y	I	N	E	T	N	A	M	P	G	F	T	A	F	S	M	Y	P	K	L
Template Known Secondary structure						.	.	.	.		S	S							S	S		.	S																				T	T													T	T										S	S				S	T	T	S
Template Predicted Secondary structure						.	.	.	.													.
Template SS confidence
		237	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		301	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		E	M	I	T	G	V	D	L	I	K	E	.	.	.	Q	L	R	I	A	A
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		W	E	N	M	G	L	S	Y	P	E	L	I	T	K	L	I	E	L	A	K
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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