Job Description P24182 Confidence 100.00% Date Thu Jan 5 11:41:00 GMT 2012 Rank 14 Aligned Residues 407 % Identity 23% Template c1m6vE_ PDB info PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.												.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	K	I	V	I	A	N	R	G	E	I	A	L	.	.	.	.	.	.	.	.	.	.	.	R	I	L	R	A	C	K	E	L	G	I	K	T	V	A	V	H	S	S	A	D	R	D	L	K	H	V	L	L	A	D	E	T	V	C	I	G	P	A	P	S	V	K	S	Y	L	N	I	P	A	I	I	S	A	A
Query Conservation																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.
Template Sequence		I	K	S	I	L	I	L	G	A	G	P	I	V	I	G	Q	A	C	E	F	D	Y	S	G	A	Q	A	C	K	A	L	R	E	E	G	Y	R	V	I	N	V	N	S	N	P	A	T	I	M	T	D	P	E	M	A	D	A	T	Y	I	E	P	.	.	.	.	.	.	.	.	I	H	W	E	V	V	R	K	I	I
Template Known Secondary structure												S		B	T	T	B		T																T	T								S		S	S		G	G	G		G	G	G		S							.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.									.	70	.	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure															.	.	.												.	.
Query SS confidence															.	.	.												.	.
Query Sequence		E	I	T	G	A	V	A	I	H	P	G	Y	G	.	.	.	F	L	S	E	N	A	N	F	A	E	Q	.	.	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	S	D	G	P	L	G	D	D	M	D	K	N
Query Conservation															.	.	.												.	.
Alig confidence															.	.	.												.	.																																									.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		E	K	E	R	P	D	A	V	L	P	T	M	G	G	Q	T	A	L	N	C	A	L	E	L	E	R	Q	G	V	L	E	E	F	G	V	T	M	I	G	A	T	A	D	A	I	D	K	A	E	D	R	R	R	F	D	V	A	M	K	K	I	G	L	E	T	A	R	S	G	.	.	.	I	A	H	T	M	E	E	A
Template Known Secondary structure							S					S	S	S														T	T					T	T					S	S										S												T					S			.	.	.			S	S
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	I	A	K	R	I	G	Y	P	V	I	I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L
Query Conservation
Alig confidence																																															.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		L	A	V	A	A	D	V	G	F	P	C	I	I	R	P	S	F	T	M	G	G	S	G	G	G	I	A	Y	N	R	E	E	F	E	E	I	C	A	R	G	L	D	L	S	P	.	.	.	.	T	K	E	L	L	I	D	E	S	L	I	G	W	K	E	Y	E	M	E	V	V	R	D	K	N	D	N	C	I	I	V
Template Known Secondary structure										S	S						T	T			T	T	T	T					S	S																T	.	.	.	.	T										T	T	S											T	T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
				226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure		.	.																																														.											.	.
Query SS confidence		.	.																																														.											.	.
Query Sequence		.	.	A	E	R	D	C	S	M	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	.	G	A	G	T	F	E	F	L	F	E	.	.	N	G	E	F	Y	F	I	E	M	N	T	R	I	Q	V	E	H	P	V	T
Query Conservation		.	.																																														.											.	.
Alig confidence		.	.																																														.											.	.
Template Conservation
Template Sequence		C	S	I	E	N	F	D	A	M	G	I	H	T	G	D	S	I	T	V	A	P	A	Q	T	L	T	D	K	E	Y	Q	I	M	R	N	A	S	M	A	V	L	R	E	I	G	V	E	T	G	G	S	N	V	Q	F	A	V	N	P	K	N	G	R	L	I	V	I	E	M	N	P	R	V	S	R	S	S	A	L	A
Template Known Secondary structure							S	S		T	T	S		G	G	G	S					S			S																					T			S											T	T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																															.																								.	.
Query SS confidence																															.																								.	.
Query Sequence		E	M	I	T	G	V	D	L	I	K	E	Q	L	R	I	A	A	G	Q	P	L	S	I	K	Q	E	E	V	H	.	V	R	G	H	A	V	E	C	R	I	N	A	E	D	P	N	T	F	L	P	S	P	G	.	.	K	I	T	R	F	H	A	P	G	G	F	G	V	R	W	E	S	H	I	Y	A	G	Y	T	V
Query Conservation																															.																								.	.
Alig confidence																															.							.	.	.	.	.	.	.	.	.	.	.							.	.									.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		S	K	A	T	G	F	P	I	A	K	V	A	A	K	L	A	V	G	Y	T	L	D	E	L	M	N	D	I	T	G	G	R	T	P	A	S	.	.	.	.	.	.	.	.	.	.	.	F	E	P	S	I	D	Y	V	V	T	K	I	P	R	F	N	.	.	.	.	.	.	F	E	K	F	A	G	A	N	D	R	L
Template Known Secondary structure						S											T	T	T			G	G	G	S	B		G	G	G	T	T	S	S	B	S		.	.	.	.	.	.	.	.	.	.	.	S			B		S	S										.	.	.	.	.	.	G	G	G		T	T				B
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.												.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.							.	.	.	.	.	.	370	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.									.	.	.	.	.	420	.	.	.	.	.	.	.	.											.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	Y	Y	D	S	M	I	G	K	L	I	C	Y	G	E	N	R	D	V	A	I	A	R	M	K	N	A	L	Q	E	L	I	I	D	G	I	.	.	.	.	.	.	.	.	K	T	N	V	D	L	Q	I	R	I	M	N	D	E	.	.	.	.	.	.	.	.	.	.	N	F	Q	H	G	G	T	N	I	H	Y
Query Conservation																																							.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Alig confidence									.																							.							.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.						.
Template Conservation									.																							.																																												.
Template Sequence		T	T	Q	M	K	S	V	.	G	E	V	M	A	I	G	R	T	Q	Q	E	S	L	Q	K	A	L	R	G	L	E	.	V	G	A	T	G	F	D	P	K	V	S	L	D	D	P	E	A	L	T	K	I	R	R	E	L	K	D	A	G	A	D	R	I	W	Y	I	A	D	A	F	R	A	G	.	L	S	V	D	G
Template Known Secondary structure			S	S					.								S	S										T	T	S		.	S	S		S	S	S			S	S		T	T		T	T											S		B	T	T											T	T	.
Template Predicted Secondary structure									.																							.																																												.
Template SS confidence
		375	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.
		440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	N	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.