Job Description P24182 Confidence 99.85% Date Thu Jan 5 11:41:00 GMT 2012 Rank 69 Aligned Residues 230 % Identity 13% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		74	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																																																							.
Query SS confidence								.	.	.	.	.																																																							.
Query Sequence		G	A	V	A	I	H	.	.	.	.	.	P	G	Y	G	F	L	S	E	N	A	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	.	S	D	G	P	L	G	D	D	M	D	K	N	R	A
Query Conservation								.	.	.	.	.																																																							.
Alig confidence								.	.	.	.	.																										.																													.
Template Conservation																																						.
Template Sequence		R	P	D	F	V	L	I	R	Q	H	A	F	G	M	A	E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	N	.	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N	H	R	E
Template Known Secondary structure				S						S					S	S	T	T													T	T					S	.								T	S	S																	T	T	T	S		B							S	S	G	G	G
Template Predicted Secondary structure																																						.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	K	R	I	G	Y	P	V	I	I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L	A	E
Query Conservation
Alig confidence																																											.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.
Template Sequence		M	L	T	L	P	T	F	P	V	V	V	K	I	G	H	A	H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	.	.	.	.	.	.	Q	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	I	R	V	Q	K	I	G	N	N	Y	K	A	Y	M	R	T	S	I
Template Known Secondary structure		G	S	S				S	S						S	S		S	T	T	T	T						S															.	.	.	.	.	.	T																					T	T									S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.							300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																							.												.	.	.
Query SS confidence																																																							.												.	.	.
Query Sequence		R	D	C	S	M	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	.	N	G	E	F	Y	F	I	E	M	N	T	.	.	.	R	I	Q	V	E	H	P	V	T	E	M	I
Query Conservation																																																							.												.	.	.
Alig confidence																					.	.	.	.	.	.	.																												.												.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		S	G	N	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	S	.	.	.	.	.	.	.	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D	C	S	M	P	L	I	G	E	H	Q	V	E	D	R	Q
Template Known Secondary structure			T	T	T	S		S				S	S								.	.	.	.	.	.	.											T	T	G	G	G			S										T	T	S										T	T					S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.								.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	D	L	I	K	E	Q	L	R	I	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	T	D	L	V	I	S	K	M	N	Q	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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