Job Description P24182 Confidence 100.00% Date Thu Jan 5 11:41:00 GMT 2012 Rank 40 Aligned Residues 302 % Identity 20% Template c1e4eB_ PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase Resolution 2.5 Å

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		4	.	.	.	.	.	10	.	.										.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Query Sequence		K	I	V	I	A	N	R	G	E	.	.	.	.	.	.	.	.	.	I	A	L	R	I	L	R	A	C	K	E	L	G	I	K	T	V	A	V	H	S	S	A	D	R	D	L	K	H	V	L	L	A	D	E	T	V	C	I	G	P	.	.	.	.	.	.	A	P	S	V	K	S	Y	L	N	I	P	A	I	I	S
Query Conservation											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	A	I	L	F	G	G	C	S	E	E	H	D	V	S	V	K	S	A	I	E	I	A	A	N	I	N	K	E	K	Y	E	P	L	Y	I	G	I	T	K	S	G	V	W	K	M	C	E	K	P	C	A	E	W	E	N	E	N	C	Y	S	A	V	L	S	P	D	K	K	M	H	G	L	L	V	K	K	N	H
Template Known Secondary structure										S	S	T	T													T	T	S		T	T	T										T	T	S						S	S		S	T	T				T	T										T	T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		A	A	E	I	T	G	A	V	A	I	H	P	G	Y	G	F	L	S	.	E	N	A	N	F	A	E	Q	V	E	R	S	G	F	I	F	I	G	P	K	A	E	T	I	R	L	M	G	D	K	V	S	A	I	A	A	M	K	K	A	G	V	P	C	V	P	G	S	D	G	P	L	G	D	D	M	D	K	N	R	A
Query Conservation																				.
Alig confidence																				.																																																									.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		E	Y	E	I	N	H	V	D	V	A	F	S	A	L	H	G	K	S	G	E	D	G	S	I	Q	G	L	F	E	L	S	G	I	P	F	V	G	C	D	I	Q	S	S	A	I	C	M	D	K	S	L	T	Y	I	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D	D	R	P	.	.	.	.	.
Template Known Secondary structure		S							S								S	T	T	T	T	S	S										T			B	S	S											S											T	T											S	S				.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	K	R	I	G	Y	P	V	I	I	K	A	S	G	G	G	G	G	R	G	M	R	V	V	R	G	D	A	E	L	A	Q	S	I	S	M	T	R	A	E	A	K	A	A	F	S	N	D	M	V	Y	M	E	K	Y	L	E	N	P	R	H	V	E	I	Q	V	L	A	D	G	Q	G	N	A	I	Y	L	A	E
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		V	A	A	T	F	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	.	.	.	.	.	.	R	Q	Y	D	S	K	I	L	I	E	Q	A	V	S	G	C	E	V	G	C	A	V	L	G	N	S	A	A	L	V	V	G	E	V	D	Q
Template Known Secondary structure			G	G	G	S		S	S						S	S			T	T	T	T						S	G	G	G									.	.	.	.	.	.	T	T	T		S	S									S											T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
													228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																																						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	R	D	C	S	M	Q	R	R	H	Q	K	V	V	E	E	A	P	A	P	G	I	T	P	E	L	R	R	Y	I	G	E	R	C	A	K	A	C	V	D	I	G	Y	R	G	A	G	T	F	E	F	L	F	E	.	N	G	E	F	Y	F	I	E	M	N	T	R	I	Q	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.																																			.
Template Conservation																															.
Template Sequence		I	R	L	Q	Y	G	I	F	R	I	H	Q	E	V	E	P	E	K	G	S	E	N	A	V	I	T	V	P	A	.	D	L	S	A	E	E	R	G	R	I	Q	E	T	V	K	K	I	Y	K	T	L	G	C	R	G	L	A	R	V	D	M	F	L	Q	D	R	G	R	I	V	L	N	E	V	N	T	L	P	G	F
Template Known Secondary structure					S	S	S				G	G	G	S	S	S	G	G	G			S	S					S	S		.	S	S																			T	T													T	T										S	S
Template Predicted Secondary structure																															.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		296	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.														.	.	.
Query SS confidence					.	.	.	.														.	.	.
Query Sequence		E	H	P	.	.	.	.	V	T	E	M	I	T	G	V	D	L	I	K	E	.	.	.	Q	L	R	I	A	A
Query Conservation					.	.	.	.														.	.	.
Alig confidence					.	.	.	.														.	.	.
Template Conservation
Template Sequence		T	S	Y	S	R	Y	P	R	M	M	A	A	A	G	I	S	L	P	E	L	I	D	R	L	I	V	L	A	L
Template Known Secondary structure		S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions