 |
| Job Description | P52076 | | Confidence | 84.39% | Date | Thu Jan 5 12:05:11 GMT 2012 |
| Rank | 185 | Aligned Residues | 58 |
| % Identity | 17% | Template | d1stza1 |
| SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| Heat-inducible transcription repressor HrcA, N-terminal domain
|
| Resolution | 2.20 |
|
 |
|   |   |
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
|
|
. | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . |
| Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
L | K | P | K | E | F | A | L | L | E | L | L | M | R | . |
. |
. |
N | A | G | R | V | L | S | R | K | L | I | E | E | K | L | Y | T | W | D | E | E | V | T | S | N | A | V | E | V | H | V | H | H | L | R | R | K | L | G | S | D | F | I | R | T | V | H | G | I | G |
| Query Conservation |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   | . | . | . |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|
|
|   |
|
|   |   |   |   |
|   |
|
|
|
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|   |   | . | . | . |   |   |   |
|
|   |   |
|
|
|   |   |
|   |   |
|
|   | . | . | . |   |
|   |
|   |
|   |
|   |
|   |
| Template Sequence |   |
L | N | D | R | Q | R | K | V | L | Y | C | I | V | R | E | Y | I | E | N | K | K | P | V | S | S | Q | R | V | L | E | V | S | . |
. |
. |
N | I | E | F | S | S | A | T | I | R | N | D | M | K | K | L | E | Y | . |
. |
. |
L | G | Y | I | Y | Q | P | H | T | S | A |
| Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S |
| B |
|  |  |  |  |  |  |  | S | . | . | . |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | T | T | S |  |  |
|
| S | S |
| S |
| Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | |
|
|
. | . | . | . | . | 70 | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|