Job Description P52076 Confidence 100.00% Date Thu Jan 5 12:05:11 GMT 2012 Rank 8 Aligned Residues 204 % Identity 43% Template c3q9sA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	L	I	E	D	D	M	L	I	G	D	G	I	K	T	G	L	S	K	M	G	F	S	V	D	W	F	T	Q	G	R	Q	G	K	E	A	L	Y	S	A	P	Y	D	A	V	I	L	D	L	T	L	P	G	M	D	G	R	D	I	L	R	E	W	R	E	K	G	Q	R	E	P	V	L	I	L	T	A	R
Query Conservation
Alig confidence																																																																					.
Template Conservation																																																																					.
Template Sequence		R	I	L	V	I	E	D	D	H	D	I	A	N	V	L	R	X	D	L	T	D	A	G	Y	V	V	D	H	A	D	S	A	X	N	G	L	I	K	A	R	E	D	H	P	D	L	I	L	L	D	L	G	L	P	D	F	D	G	G	D	V	V	Q	R	L	R	K	.	N	S	A	L	P	I	I	V	L	T	A	R
Template Known Secondary structure								S														T	T	T							S	S											S			S								S														T	.	T										S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	A	E	R	V	E	G	L	R	L	G	A	D	D	Y	L	C	K	P	F	A	L	I	E	V	A	A	R	L	E	A	L	M	R	R	T	N	G	Q	A	S	N	E	L	R	H	G	N	V	M	L	D	P	G	K	R	I	A	T	L	A	G	E	P	L	T	L	K	P	K	E	F	A	L	L	E	L	L
Query Conservation
Alig confidence																																				.	.	.
Template Conservation																																				.	.	.
Template Sequence		D	T	V	E	E	K	V	R	L	L	G	L	G	A	D	D	Y	L	I	K	P	F	H	P	D	E	L	L	A	R	V	K	V	Q	.	.	.	L	R	Q	R	T	S	E	S	L	S	X	G	D	L	T	L	D	P	Q	K	R	L	V	T	Y	K	G	E	E	L	R	L	S	P	K	E	F	D	I	L	A	L	L
Template Known Secondary structure			S											T		S					S	S														.	.	.						S						T	T					T	T	T	T					T	T
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		M	R	N	A	G	R	V	L	S	R	K	L	I	E	E	K	L	Y	T	W	D	E	E	V	T	S	N	A	V	E	V	H	V	H	H	L	R	R	K	L	.	.	.	.	G	S	D	F	I	R	T	V
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.
Template Conservation
Template Sequence		I	R	Q	P	G	R	V	Y	S	R	Q	E	I	G	Q	E	I	W	Q	G	R	L	P	E	G	S	N	V	V	D	V	H	X	A	N	L	R	A	K	L	R	D	L	D	G	Y	G	L	L	R	T	V
Template Known Secondary structure				S	T	T														T	T		S		T	T		S																	S				S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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