Job Description P52076 Confidence 20.71% Date Thu Jan 5 12:05:11 GMT 2012 Rank 499 Aligned Residues 87 % Identity 15% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.				10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.
Predicted Secondary structure										.	.	.																											.	.	.	.	.										.																	.	.	.	.	.	.
Query SS confidence										.	.	.																											.	.	.	.	.										.																	.	.	.	.	.	.
Query Sequence		R	I	L	L	I	E	D	D	.	.	.	M	L	I	G	D	G	I	K	T	G	L	S	K	M	G	F	S	V	D	W	F	T	Q	G	R	Q	.	.	.	.	.	G	K	E	A	L	Y	S	A	P	.	Y	D	A	V	I	L	D	L	T	L	P	G	M	D	G	R	.	.	.	.	.	.	D	I	L	R	E	W
Query Conservation										.	.	.																											.	.	.	.	.										.																	.	.	.	.	.	.
Alig confidence										.	.	.																											.	.	.	.	.										.								.	.								.	.	.	.	.	.
Template Conservation																																																													.	.
Template Sequence		K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	.	.	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K
Template Known Secondary structure									S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T							T	T	S	S		S						.	.				S		S	S											T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	K	G	Q	R	E	P	V	L	I	L	T	A	R	D	A	L	A	E	R	V	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A
Template Known Secondary structure		S	S	S			S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions