Job Description P76339 Confidence 98.58% Date Thu Jan 5 12:21:56 GMT 2012 Rank 37 Aligned Residues 93 % Identity 16% Template c3h4lB_ PDB info PDB header:dna binding protein, protein binding Chain: B: PDB Molecule:dna mismatch repair protein pms1; PDBTitle: crystal structure of n terminal domain of a dna repair protein Resolution 2.50 Å

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		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.								.	.	410	.	.	.	.	.		.	.	.	.	420
Predicted Secondary structure																																																													.	.	.	.	.	.	.									.
Query SS confidence																																																													.	.	.	.	.	.	.									.
Query Sequence		L	Q	R	M	L	S	N	L	I	V	N	A	I	R	Y	S	P	E	K	S	R	I	H	I	T	S	F	L	D	T	N	S	Y	L	N	I	D	I	A	S	P	G	T	K	I	N	E	P	E	K	L	F	R	R	F	W	R	G	D	.	.	.	.	.	.	.	N	S	R	H	S	V	G	Q	.	G	L	G	L	S
Query Conservation																																																													.	.	.	.	.	.	.									.
Alig confidence																			.	.																																									.	.	.	.	.	.	.									.
Template Conservation																			.	.
Template Sequence		L	T	T	A	V	K	E	L	V	D	N	S	I	D	A	N	A	.	.	N	Q	I	E	I	I	F	K	D	Y	G	L	E	S	I	E	C	S	D	N	G	D	G	I	D	P	S	N	Y	E	F	L	A	L	K	H	Y	T	S	K	I	A	K	F	Q	D	V	A	K	V	Q	T	L	G	F	R	G	E	A	L	S
Template Known Secondary structure																T	T		.	.	S								G	G	G	T	S								S					T	T	T	G	G	G	S	S									T	T	S	S						T	T	S	S			S	S
Template Predicted Secondary structure																			.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		L	V	K	A	I	A	E	L	H	G	G	S	A	T	Y	H	Y	.	L	N	K	H	N	V	F	R	I	T	L
Query Conservation																			.
Alig confidence							.	.	.	.	.								.
Template Conservation							.	.	.	.	.
Template Sequence		S	L	C	G	I	.	.	.	.	.	A	K	L	S	V	I	T	T	T	S	P	P	K	A	D	K	L	E	Y
Template Known Secondary structure						S	.	.	.	.	.	S								S	S	T	T
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		133	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions