Job Description P76339 Confidence 99.64% Date Thu Jan 5 12:21:56 GMT 2012 Rank 25 Aligned Residues 102 % Identity 20% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.						.	.	.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.			410	.	.	.	.	.		.	.	.
Predicted Secondary structure																				.	.	.	.	.														.	.																															.	.							.
Query SS confidence																				.	.	.	.	.														.	.																															.	.							.
Query Sequence		L	Q	R	M	L	S	N	L	I	V	N	A	I	R	Y	S	P	E	.	.	.	.	.	K	S	R	I	H	I	T	S	F	L	D	T	N	.	.	S	Y	L	N	I	D	I	A	S	P	G	T	K	I	N	E	P	E	K	L	F	R	R	F	W	R	G	D	N	S	.	.	R	H	S	V	G	Q	.	G	L	G
Query Conservation																				.	.	.	.	.														.	.																															.	.							.
Alig confidence																				.	.	.	.	.														.	.																															.	.							.
Template Conservation
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	M	Y	G	L	G
Template Known Secondary structure															T	T	T	T	T	T	T														T	T	T	T										S					G	G	G	S					T	S				S						S			S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.			.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																.						.	.
Query SS confidence																.						.	.
Query Sequence		L	S	L	V	K	A	I	A	E	L	H	G	G	S	.	A	T	Y	H	Y	.	.	L	N	K	H	N	V	F	R	I	T	L	P	Q
Query Conservation																.						.	.
Alig confidence																.						.	.
Template Conservation
Template Sequence		V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I
Template Known Secondary structure																								T	T		S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions