Return to main results Retrieve Phyre Job Id

Job DescriptionP76339
Confidence97.97%DateThu Jan 5 12:21:56 GMT 2012
Rank46Aligned Residues96
% Identity18%Templatec1s16B_
PDB info PDB header:isomeraseChain: B: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of e. coli topoisomerase iv pare 43kda subunit2 complexed with adpnp
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   349350.........360.........370.........380.........390..... ....400........ .410....
Predicted Secondary structure 



















........






......





Query SS confidence 














































. . . . . . . .












. . . . . .





Query Sequence  LQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINE. . . . . . . . PEKLFRRFWRGDN. . . . . . SRHSVG
Query Conservation 
  

 


 

 
       
 
         
 
 
 
 

    ........   




     ......
    
Alig confidence 














































........












......





Template Conservation 
  





 



      
  
 
 
   
 
 
 


 


            
       
           
 
 
Template Sequence  PNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGL
Template Known Secondary structure  TTT

S
TTS

SS



SB
TTT
SB
TT
SS
SSSSS
SS
S

Template Predicted Secondary structure 









































Template SS confidence 















































































   2032.......2040.........2050.........2060.........2070.........2080.........2090.........2100.........2110.
 
   415....420.........430.........440........
Predicted Secondary structure 








Query SS confidence 

































Query Sequence  QGLGLSLVKAIAELHGGSATYHYLNKHNVFRITL
Query Conservation   



 

  

  


 
 
 
   

 
 
 
Alig confidence 





....























Template Conservation   
 

 .... 
 
 
    
     
       
Template Sequence  HGVGIS. . . . VVNALSKRVEVNVRRDGQVYNIAF
Template Known Secondary structure  SS
....TTT
Template Predicted Secondary structure 

....

Template SS confidence 

































   2112..... ..2120.........2130.........2140.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions