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Job DescriptionP0ACP5
Confidence99.89%DateThu Jan 5 11:18:39 GMT 2012
Rank52Aligned Residues266
% Identity13%Templated8abpa_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.49

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.........110.........120..... ....130.........140.
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Query Sequence  RAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLIL. . TERTHTPRTLKMIEVA
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Template Sequence  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP. DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGY
Template Known Secondary structure  S
TTST

.STT


S
GGGT
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   3......10.........20.........30.........40. ........50.........60.........70.........80.
 
   142.......150.... .....160.........170.........180.. .......190.........200.......
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Query Sequence  GIPVVELMDSKSP. . . . . . CLDIAVGFDNFEAARQMTTAIIARGHRH. . . . . . . . IAYLGARLDERTIIKQKGYEQAMLD
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Template Conservation   
 

                   
  
    
      
                             
  
       
Template Sequence  DMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA
Template Known Secondary structure  T
SS

B
TTS
B
TTS

T

GGG
TTS
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   208.210....... ..220.........230.........240. ........250.........260.........270.........280...
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Query Sequence  AGLVPYSVMV. . EQSSSYSSGIELIRQARREYPQLD. . GVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGHDIGQVM
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Template Sequence  AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII. GIGINGVDAVSEL
Template Known Secondary structure  T

GGG
SSSSTT
TT
S
SSTT

GGG.SSGGG
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   162.......170.........180.........190.........200.........210.........220....... ..230.........240
 
   284.....290.........300.........310...... ...320.........330.
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Query Sequence  . . . . . EPRLASVLTPRERMGSIGAERLLARIRGESVTP. KMLDLGFTLSPGGSI
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Template Conservation            

 
     
  

  
   
 
           
  



 
 
Template Sequence  SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF
Template Known Secondary structure  TSSS

S






S


TTT
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   241........250.........260.........270.........280.........290....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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