Job Description P0ACP5 Confidence 99.96% Date Thu Jan 5 11:18:39 GMT 2012 Rank 31 Aligned Residues 265 % Identity 20% Template d1jyea_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		A	I	G	V	L	L	P	S	L	T	N	Q	V	F	A	E	V	L	R	G	I	E	S	V	T	D	A	H	G	Y	Q	T	M	L	A	H	Y	.	G	Y	K	P	E	M	E	Q	E	R	L	E	S	M	L	S	W	N	I	D	G	L	I	L	T	E	R	T	H	T	P	R	T	L	K	M	I	E	V	A	G	I
Query Conservation																																							.
Alig confidence																																							.
Template Conservation
Template Sequence		L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	L	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	T	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T	N
Template Known Secondary structure								S		T	T	S																	T	T										S	S	S													T	T	T		S						S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		P	V	V	E	L	M	D	S	K	S	P	C	L	D	I	A	V	G	F	D	N	F	E	A	A	R	Q	M	T	T	A	I	I	A	R	G	H	R	H	I	A	Y	L	G	A	R	L	D	E	R	T	.	I	I	K	Q	K	G	Y	E	Q	A	M	L	D	A	G	L	V	P	Y	S	V	M	V	E	Q	S	S	S
Query Conservation																																																					.
Alig confidence																																																					.																					.
Template Conservation																																																																										.
Template Sequence		V	P	A	L	F	L	D	V	S	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I	A	.	E	R	E	G	D	W	S
Template Known Secondary structure		S					S	S	S		T	T	S	S	S																						T			S								T	T	S																	T	T				S		.						S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	S	G	I	E	L	I	R	Q	A	R	R	E	Y	P	Q	L	D	G	V	F	C	T	N	D	D	L	A	V	G	A	A	F	E	C	Q	R	L	G	L	K	V	P	D	D	M	A	I	A	G	F	H	G	H	D	I	G	Q	V	M	E	P	R	L	A	S	V	L	T	P	R	E	R	M	G	S	I	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	L	T	T	I	K	Q	D	F	R	L	L	G	Q	T	S	V
Template Known Secondary structure															T	T				S					S	S														T	T			B	T	T	T	B					S	B			G	G	G	G	G	S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	L	A	R	I	R	G	E	S	V	T	P	K	M	L	D	L	G	F	T	L	S	P	G	G	S	I
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		D	R	L	L	Q	L	S	Q	G	Q	A	V	K	.	G	N	Q	L	L	P	V	S	L	V	K	R	K	T	T
Template Known Secondary structure									T	T		S		S	.	S												S	S
Template Predicted Secondary structure															.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions