Phyre 2 alignment of P0ACP5 with d1jx6a

Job Description P0ACP5
Confidence 99.96% Date Thu Jan 5 11:18:39 GMT 2012

Rank 38 Aligned Residues 299

% Identity 17% Template d1jx6a_

SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like

Resolution 1.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.																.
Query SS confidence																																										.	.																.
Query Sequence	T	V	S	R	F	L	R	N	P	E	Q	V	S	V	A	L	R	G	K	I	A	A	A	L	D	E	L	G	Y	I	P	N	R	A	P	D	I	L	S	N	A	.	.	T	S	R	A	I	G	V	L	L	P	S	L	T	N	Q	.	V	F	A	E	V	L	R	G	I	E	S	V	T	D	A	H	G	Y	Q	T	M
Query Conservation																																										.	.																.
Alig confidence											.	.	.	.	.	.						.	.																			.	.																.
Template Conservation											.	.	.	.	.	.						.	.
Template Sequence	G	Y	Q	E	F	L	D	E	F	P	.	.	.	.	.	.	E	Q	R	N	L	.	.	T	N	A	L	S	E	A	V	R	A	Q	P	V	P	L	S	K	P	T	Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N	I	N	Y	Q
Template Known Secondary structure											.	.	.	.	.	.						.	.										S						S	S			S	S												S	S																		T	T
Template Predicted Secondary structure											.	.	.	.	.	.						.	.
Template SS confidence
	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.

	98	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.									.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure				.	.	.	.																																																				.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.																																																				.	.	.	.	.	.	.	.
Query Sequence	L	A	H	.	.	.	.	Y	G	Y	K	P	E	M	E	Q	E	R	L	E	S	M	L	S	W	N	I	D	G	L	I	L	T	E	R	T	H	T	P	R	T	L	K	M	I	E	V	A	G	I	P	V	V	E	L	M	D	S	.	.	.	.	.	.	.	.	K	S	P	C	L	D	I	A	V	G	F	D	N	F
Query Conservation				.	.	.	.																																																				.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F	D	H	A
Template Known Secondary structure								T	T																T	T		S							S	S	S	T	T												S							T			S		B	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

	166	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence	E	A	A	R	Q	M	T	T	A	I	I	A	R	.	.	G	H	R	H	I	A	Y	L	G	A	R	L	D	E	R	T	I	I	K	Q	K	G	Y	E	Q	A	M	L	D	A	G	L	V	P	Y	S	V	M	V	E	Q	S	S	S	Y	S	S	G	I	E	L	I	R	Q	A	R	R	E	Y	P	Q	L	D	G	V
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	N	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V	D	F	I
Template Known Secondary structure														S		T	T									S	T	T																														S	S																			S
Template Predicted Secondary structure
Template SS confidence
	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																						.	.									.
Query SS confidence																																						.	.									.
Query Sequence	F	C	T	N	D	D	L	A	V	G	A	A	F	E	C	Q	R	L	G	L	K	V	P	D	D	M	A	I	A	G	F	H	G	H	D	I	G	.	.	Q	V	M	E	P	R	L	A	.	S	V	L	T	P	R	E	R	M	G	S	I	G	A	E	R	L	L	A	R	I	R	G	E	S	V	T	P	K	M	L	D
Query Conservation																																						.	.									.
Alig confidence																					.	.	.															.	.									.																											.
Template Conservation																					.	.	.																																																				.
Template Sequence	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	.	.	.	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V	.	P	T	V	Y	S
Template Known Secondary structure			S	S															T		.	.	.	T	T	S			B		S	B												T	S	S								T																T	T				.		S
Template Predicted Secondary structure																					.	.	.																																																				.
Template SS confidence
	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.

	321	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	G	F	T	L	S	P	G	G	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	D	F	E	I	V	T	K	A	D	S
Template Known Secondary structure								T	T	S
Template Predicted Secondary structure
Template SS confidence
	338	.	340	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions