Job Description P0ACP5 Confidence 99.88% Date Thu Jan 5 11:18:39 GMT 2012 Rank 55 Aligned Residues 259 % Identity 18% Template c3ksmA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Resolution 1.90 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																															.	.	.
Query SS confidence																																							.	.																															.	.	.
Query Sequence		A	I	G	V	L	L	P	S	L	T	N	Q	V	F	A	E	V	L	R	G	I	E	S	V	T	D	A	H	G	Y	Q	T	M	L	A	H	Y	.	.	G	Y	K	P	E	M	E	Q	E	R	L	E	S	M	L	S	W	N	I	D	G	L	I	L	T	E	R	T	H	T	.	.	.	P	R	T	L	K	M	I	E
Query Conservation																																							.	.																															.	.	.
Alig confidence																																							.	.																															.	.	.
Template Conservation
Template Sequence		K	L	L	L	V	L	K	G	D	S	N	A	Y	W	R	Q	V	Y	L	G	A	Q	K	A	A	D	E	A	G	V	T	L	L	H	R	S	T	K	D	D	G	D	I	A	G	Q	I	Q	I	L	S	Y	H	L	S	Q	A	P	P	D	A	L	I	L	A	P	N	S	A	E	D	L	T	P	S	V	A	Q	Y	R
Template Known Secondary structure								S		S	S	S	T																	T									S	S	T	T																S			S							S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																						.																				.	.	.	.															.
Query SS confidence																						.																				.	.	.	.															.
Query Sequence		V	A	G	I	P	V	V	E	L	M	D	S	K	S	P	C	L	D	I	A	.	V	G	F	D	N	F	E	A	A	R	Q	M	T	T	A	I	I	A	R	.	.	.	.	G	H	R	H	I	A	Y	L	G	A	R	L	D	E	.	R	T	I	I	K	Q	K	G	Y	E	Q	A	M	L	D	A	G	L	V	P	Y
Query Conservation																						.																				.	.	.	.															.
Alig confidence																						.																				.	.	.	.															.
Template Conservation
Template Sequence		A	R	N	I	P	V	L	V	V	D	S	D	L	A	G	D	A	H	Q	G	L	V	A	T	D	N	Y	A	A	G	Q	L	A	A	R	A	L	L	A	T	L	D	L	S	K	E	R	N	I	A	L	L	R	L	R	A	G	N	A	S	T	D	Q	R	E	Q	G	F	L	D	V	L	R	K	H	D	K	I	R	I
Template Known Secondary structure			T	T							S	S			S	S	S		S	S																						S		T	T	S								B			T	T																T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		S	V	M	V	E	Q	S	S	S	Y	S	S	G	I	E	L	I	R	Q	A	R	R	E	Y	P	Q	L	D	G	V	F	C	T	N	D	D	L	A	V	G	A	A	F	E	C	Q	R	L	G	L	K	V	P	D	D	M	A	I	A	G	F	H	G	H	D	I	G	Q	V	M	.	.	.	E	P	R	L	A	S	V
Query Conservation																																																																								.	.	.
Alig confidence																																																			.	.																				.	.	.
Template Conservation																																																			.	.
Template Sequence		I	A	A	P	Y	A	G	D	D	R	G	A	A	R	S	E	X	L	R	L	L	K	E	T	P	T	I	D	G	L	F	T	P	N	E	S	T	T	I	G	A	L	V	A	I	R	Q	S	G	.	.	X	S	K	Q	F	G	F	I	G	F	D	Q	T	E	E	L	E	A	A	X	Y	A	G	E	I	S	N	L	V
Template Known Secondary structure						B			S	S																S									S														T	T	.	.		T	T	S	S						S											T	T	S	S	S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	P	R	E	R	M	G	S	I	G	A	E	R	L	L	A	R	I	R	G	E	S	V	T	P	K	M	L	D	L	G	F	T	L	S
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		V	Q	N	P	E	Y	X	G	Y	L	A	V	Q	R	A	L	D	L	V	R	G	K	.	P	I	P	A	F	T	D	T	G	V	R	L	L
Template Known Secondary structure																					T	T		.				S									S
Template Predicted Secondary structure																								.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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