Job Description P0ACP5 Confidence 100.00% Date Thu Jan 5 11:18:39 GMT 2012 Rank 1 Aligned Residues 329 % Identity 30% Template c3kjxD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi Resolution 2.33 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	R	P	V	L	Q	D	V	A	D	R	V	G	V	T	K	M	T	V	S	R	F	L	R	N	P	E	Q	V	S	V	A	L	R	G	K	I	A	A	A	L	D	E	L	G	Y	I	P	N	R	A	P	D	I	L	S	N	A	T	S	R	A	I	G	V	L	L	P	S	L	T	N	Q	V	F	A	E	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	P	L	T	L	R	D	V	S	E	A	S	G	V	S	E	X	T	V	S	R	V	L	R	N	R	G	D	V	S	D	A	T	R	A	R	V	L	A	A	A	K	E	L	G	Y	V	P	N	K	I	A	G	A	L	A	S	N	R	V	N	L	V	A	V	I	I	P	S	L	S	N	X	V	F	P	E	V	L
Template Known Secondary structure							T									S									T	T			S				T	T	T	S											T										T	T	S	S			S							S		S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	I	E	S	V	T	D	A	H	G	Y	Q	T	M	L	A	H	Y	G	Y	K	P	E	M	E	Q	E	R	L	E	S	M	L	S	W	N	I	D	G	L	I	L	T	E	R	T	H	T	P	R	T	L	K	M	I	E	V	A	G	I	P	V	V	E	L	M	D	S	K	S	P	C	L	D	I	A	V	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	I	N	Q	V	L	E	D	T	E	L	Q	P	V	V	G	V	T	D	Y	L	P	E	K	E	E	K	V	L	Y	E	X	L	S	W	R	P	S	G	V	I	I	A	G	L	E	H	S	E	A	A	R	A	X	L	D	A	A	G	I	P	V	V	E	I	X	D	S	D	G	K	P	V	D	A	X	V	G	I
Template Known Secondary structure									T	T	S	S									T	T														T	T			S							S				S								T		S	S									S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																												.
Query SS confidence																																		.	.																												.
Query Sequence		D	N	F	E	A	A	R	Q	M	T	T	A	I	I	A	R	G	H	R	H	I	A	Y	L	G	A	R	L	D	E	R	T	.	.	I	I	K	Q	K	G	Y	E	Q	A	M	L	D	A	G	L	V	P	Y	S	V	M	V	E	Q	S	S	.	S	Y	S	S	G	I	E	L	I	R	Q	A	R	R	E	Y	P	Q
Query Conservation																																		.	.																												.
Alig confidence																																		.	.																												.
Template Conservation
Template Sequence		S	H	R	R	A	G	R	E	X	A	Q	A	I	L	K	A	G	Y	R	R	I	G	F	X	G	T	K	X	P	L	D	Y	R	A	R	K	R	F	E	G	F	T	E	V	L	G	K	N	G	V	E	I	E	D	R	E	F	Y	S	G	G	S	A	L	A	K	G	R	E	X	T	Q	A	X	L	E	R	S	P	D
Template Known Secondary structure																	T	T			S						S	S	T	T	T																		T	T				S							S																			T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		L	D	G	V	F	C	T	N	D	D	L	A	V	G	A	A	F	E	C	Q	R	L	G	L	K	V	P	D	D	M	A	I	A	G	F	H	G	H	D	I	G	Q	V	M	E	P	R	L	A	S	V	L	T	P	R	E	R	M	G	S	I	G	A	E	R	L	L	A	R	I	R	G	E	S	V	T	.	P	K	M
Query Conservation																																																																														.
Alig confidence																																																																														.
Template Conservation
Template Sequence		L	D	F	L	Y	Y	S	N	D	X	I	A	A	G	G	L	L	Y	L	L	E	Q	G	I	D	I	P	G	Q	I	G	L	A	G	F	N	N	V	E	L	L	Q	G	L	P	R	K	L	A	T	X	D	A	C	R	L	E	I	G	R	K	A	A	E	I	I	A	K	R	L	E	D	P	E	A	E	I	E	T	R
Template Known Secondary structure								S	S														T	T			T	T	T	T						S	B			G	G	G	G	G	S	S	S			B			B																					G	G	G
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	L	G	F	T	L	S	P	G	G	S	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	L	E	P	K	I	S	Y	G	D	T	L
Template Known Secondary structure												S	S	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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