Job Description P0ACP5 Confidence 99.97% Date Thu Jan 5 11:18:39 GMT 2012 Rank 27 Aligned Residues 261 % Identity 17% Template c3hs3A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:ribose operon repressor; PDBTitle: crystal structure of periplasmic binding ribose operon2 repressor protein from lactobacillus acidophilus Resolution 1.60 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		A	T	S	R	A	I	G	V	L	L	P	S	L	T	N	Q	V	F	A	E	V	L	R	G	I	E	S	V	T	D	A	H	G	Y	Q	T	M	L	A	.	H	Y	G	Y	K	P	E	M	E	Q	E	R	L	E	S	M	L	S	W	N	I	D	G	L	I	L	T	E	R	T	H	T	P	R	T	L	K	M	I	E
Query Conservation																																									.
Alig confidence																																									.																																			.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		K	K	S	K	M	I	G	I	I	I	P	D	L	N	N	R	F	Y	A	Q	I	I	D	G	I	Q	E	V	I	Q	K	E	G	Y	T	A	L	I	S	F	S	T	N	S	D	V	K	K	Y	Q	N	A	I	I	N	F	E	N	N	N	V	D	G	I	I	T	S	A	F	T	I	P	P	N	.	.	.	.	.	F
Template Known Secondary structure												S		T	T	S																	T	T									S	S																T	T		S											T	T	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	G	I	P	V	V	E	L	M	D	S	K	S	P	C	L	D	I	A	V	G	F	D	N	F	E	A	A	R	Q	M	T	T	A	I	I	A	R	G	H	R	H	I	A	Y	L	G	A	R	L	D	E	R	T	I	I	K	Q	K	G	Y	E	Q	A	M	L	D	A	G	L	V	P	Y	S	V	M	V	E	Q
Query Conservation
Alig confidence																																																																								.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		H	L	N	T	P	L	V	M	Y	D	S	A	N	I	N	D	D	I	V	R	I	V	S	N	N	T	K	G	G	K	E	S	I	K	L	L	S	K	K	I	E	K	V	L	I	Q	H	W	P	L	S	L	P	T	I	R	E	R	I	E	A	M	T	A	E	A	S	K	L	K	.	.	.	.	I	D	Y	L	L	E
Template Known Secondary structure				S	S						S						S	S	S																	T	S		T	T									S		T	T	S																	T	T	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	S	Y	S	S	G	I	E	L	I	R	Q	A	R	R	E	Y	P	Q	L	D	G	V	F	C	T	N	D	D	L	A	V	G	A	A	F	E	C	Q	R	L	G	L	K	V	P	D	D	M	A	I	A	G	F	H	G	H	D	I	G	Q	V	M	E	P	R	L	A	S	V	L	T	P	R	E	R	M	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	P	E	N	N	P	Y	I	S	A	Q	S	A	L	N	K	S	N	Q	F	D	A	I	I	T	V	N	D	L	Y	A	A	E	I	I	K	E	A	K	R	R	N	L	K	I	P	D	D	F	Q	L	V	G	Y	D	N	N	I	L	C	G	Y	T	S	P	T	I	S	T	I	D	Q	N	P	K	L	I	G	Q
Template Known Secondary structure					S	S												T	G	G	G		S					S	S														T	T			T	T	T	T						S	B			G	G	G	G	T	S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	A	E	R	L	L	A	R	I	R	G	E	S	V	T	P	K	M	L	D	L	G	F	T	L	S	P	G	G	S	I
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		T	A	A	H	R	L	L	D	L	M	S	G	N	N	S	.	T	R	N	S	I	I	D	V	L	P	I	K	R	D	S	T
Template Known Secondary structure											T	T	T				.
Template Predicted Secondary structure																	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions