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Job DescriptionP0ACP5
Confidence99.98%DateThu Jan 5 11:18:39 GMT 2012
Rank10Aligned Residues270
% Identity24%Templatec2o20H_
PDB info PDB header:transcriptionChain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90.........100.........110.........120.........130.........140
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Query Sequence  ATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEV
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Template Sequence  KRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKN
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S
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   61........70.........80.........90.........100.........110.........120.........130.........140
 
   141........150.........160.........170.........180.........190.... .....200.........210.........
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Query Sequence  AGIPVVELMDSKSPCLDIAVGFDNFEAARQMTTAIIARGHRHIAYLGARLDERT. IIKQKGYEQAMLDAGLVPYSVMVEQ
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Template Sequence  SRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFE
Template Known Secondary structure  T

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   141........150.........160.........170.........180.........190.........200.........210.........220
 
   220.........230.........240.........250.........260.........270.........280.........290.........
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Query Sequence  SSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGS
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Template Sequence  GNYSYEQGKALAERL. LERGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGA
Template Known Secondary structure  S

STT.TT
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   221........230..... ....240.........250.........260.........270.........280.........290.........
 
   300.........310.........320.........330.
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Query Sequence  IGAERLLARIRGESVTPKMLDLGFTLSPGGSI
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Template Sequence  VAMRLLTKLMLKEDVEQNQLVLDHEIFSRRST
Template Known Secondary structure  TT


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TT
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   300.........310.........320.........330.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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