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Job DescriptionP0ACP5
Confidence99.94%DateThu Jan 5 11:18:39 GMT 2012
Rank44Aligned Residues248
% Identity25%Templatec2h0aA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of probable transcription regulator from2 thermus thermophilus
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90.........100.........110.........120.........130.........140....
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Query Sequence  AIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIP
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Template Sequence  TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPILSLARLK. . . . . . . . . YLTDGLILASYDLTRL. . . . . . PTERP
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   65....70.........80.........90.........100........ .110.........120.... .....
 
   145....150.........160.........170.........180... ......190.........200.........210... ......220
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Query Sequence  VVELMDSKSPCLDIAVGFDNFEAARQMTTAIIARGHRHI. . . AYLGARLDERTIIKQKGYEQAMLDAGLVPY. SVMVEQS
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Template Sequence  VVLVDAQNP. . RYDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRRTVFAERMAGFQEALKEAGRPFSPDRLYITR
Template Known Secondary structure  SS

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   145....150... ......160.........170.........180.........190.........200.........210.........220..
 
   221........230.........240.........250.........260.........270.........280.........290.........300
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Query Sequence  SSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGSI
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Template Sequence  HSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDGHPFAEE. . AGLSTIAQPVEAMGAR
Template Known Secondary structure  SSTT

SS
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   226...230.........240.........250.........260.........270.........280....... ..290.........300...
 
   301........310.........320.........330.
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Query Sequence  GAERLLARIRGESVTPKMLDLGFTLSPGGSI
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Template Sequence  AAQLLLERMRGYQGPPREVRFEPVLVERAST
Template Known Secondary structure  TT

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   304.....310.........320.........330....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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