 |
Job Description | P75905 | Confidence | 83.85% | Date | Thu Jan 5 12:15:52 GMT 2012 |
Rank | 51 | Aligned Residues | 96 |
% Identity | 16% | Template | c3okrA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; |
PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
|
Resolution | 2.40 Å |
|
 |
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | |
. | . | . | . | . | 160 | . | . | . | . | . | . | |
. |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |
|
|
|
| . |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
Query Sequence |   |
V | E | E | T | I | H | A | A | L | A | Q | R | Y | E | N | I | E | V | I | A | V | N | D | G | S | T | D | K | T | R | A | I | L | D | R | M | A | A | Q | I | P | H | L | R | V | I | H | L | A | Q | N | Q | G | K | A | I | A | L | K | T | G | A | A | A | A | . |
K | S | E | Y | L | V | C | I | D | G | D | A | . |
L |
Query Conservation |   |
|   |   |   |
|   |
|
|   |   |   |   |
|
|   |   |
|
|
|
|
|
|
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|   |
|   |   |   |   | . |   |   |   |   |   |   |   |   |
|
|
|   | . |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
Template Conservation |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |
|   |
Template Sequence |   |
I | E | R | A | V | D | G | L | L | D | S | G | V | V | D | T | V | V | V | A | V | P | . |
. |
. |
A | D | R | T | D | E | A | R | Q | I | L | G | H | R | A | . |
. |
. |
. |
. |
M | I | V | A | G | G | S | N | R | T | D | T | V | N | L | A | L | T | V | L | S | E | P | E | F | V | L | V | H | D | A | A | R | A | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |  |
| . | . | . | G | G | G |  |  |  |  |  |  |  |  | G | G | G |
| . | . | . | . | . |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| S |  |  |  |  |
|
| T | T |
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
|
|
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
  |
  |   |
168 | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | R | D | A | A | A | Y | I | V | E | P | M | L | Y | N | P | R | V | G | A | V | T | G | N | P |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | P | P | A | L | V | A | R | V | V | E | A | L | R | D | G | Y | A | A | V | V | P | V | L | P | L |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|