Job Description P75905 Confidence 81.75% Date Thu Jan 5 12:15:52 GMT 2012 Rank 56 Aligned Residues 209 % Identity 14% Template c3oamD_ PDB info PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae Resolution 1.75 Å

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		76	.	.	.	80	.	.	.	.	.	.	.	.															.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	S	I	I	I	P	C	F	N	E	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	E	E	T	I	H	A	A	L	A	Q	R	Y	E	N	I	E	V	I	A	V	N	D	G	S	T	D	K	T	R	A	I	L	D	R	M	A	A	Q	I	P	H	L	R	V	I	H	L	A	Q	N	Q
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.														.											.	.	.	.	.	.
Template Conservation																																										.											.	.	.	.	.	.
Template Sequence		S	F	T	V	V	I	P	A	R	Y	Q	S	T	R	L	P	G	K	P	L	A	D	I	G	G	K	P	M	I	Q	W	V	Y	E	Q	A	M	Q	A	G	.	A	D	R	V	I	I	A	T	D	D	.	.	.	.	.	.	E	R	V	E	Q	A	V	Q	A	F	G	G	V	V	C	M	T	S	P	N	H	Q	S
Template Known Secondary structure											S			S	S	S	T	T	G	G	G				T	T														T	T	.		S							S		.	.	.	.	.	.										T	T								S	S	S
Template Predicted Secondary structure																																										.											.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.															.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure													.	.															.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.															.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	A	I	A	L	K	T	G	A	A	.	.	A	A	K	S	E	Y	L	V	C	I	D	G	D	A	.	L	L	D	R	D	A	A	A	Y	I	V	E	P	M	L	Y	N	P	R	V	G	A	V	T	G	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	R	T	R	S	T	L	V	G	K
Query Conservation													.	.															.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.															.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	E	R	L	A	E	V	V	A	K	M	A	I	P	A	D	H	I	V	V	N	V	Q	G	D	E	P	L	I	P	P	A	I	I	R	Q	V	A	D	N	L	A	A	C	S	A	P	M	A	T	L	A	V	E	I	E	D	E	A	E	V	F	N	P	N	A	V	K	V	I	T	D	K	S	G	Y	A	L	Y
Template Known Secondary structure		S											T	T			T	T								T	T		T	T															T	S	S		S															T		T	T	S							T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		I	Q	V	G	E	Y	S	S	I	I	G	L	I	K	R	T	Q	R	I	Y	G	N	V	F	T	V	S	G	V	I	A	A	F	R	R	S	A	L	A	E	V	G	Y	W	S	D	D	M	I	T	E	D	I	D	I	.	S	W	K	L	Q	L	N	Q	W	T	I	F	Y	E	P	R	A	L	C	W	I	L	M	P
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		F	S	R	A	T	I	P	W	D	R	D	N	F	A	K	A	D	K	A	I	V	Q	P	L	L	R	H	I	G	I	Y	A	Y	R	A	G	F	I	N	T	Y	L	D	W	Q	P	S	Q	L	E	K	I	E	C	L	E	Q	L	R	V	L	W	H	G	E	K	I	H	V	A	V	A	L	E	A	P	P	A	G	V
Template Known Secondary structure				S	S		S	S							T	S	S	S					S																						S										T		T	T						T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		284	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	L	K	G	L	W	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	P	E	D	L	E	V
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions