Job Description P75905 Confidence 100.00% Date Thu Jan 5 12:15:52 GMT 2012 Rank 3 Aligned Residues 252 % Identity 17% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.										.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																	.																			.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.																	.																			.	.
Query Sequence		Y	R	E	R	H	W	P	W	G	E	N	A	P	A	P	Q	L	.	.	.	.	.	.	.	.	.	K	D	N	P	S	I	S	I	I	I	P	C	F	N	E	E	.	K	N	V	E	E	T	I	H	A	A	L	A	Q	R	Y	E	N	I	.	.	E	V	I	A	V	N	D	G	S	T	D	K	T	R	A	I	L
Query Conservation																			.	.	.	.	.	.	.	.	.																	.																			.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																	.																			.	.
Template Conservation
Template Sequence		V	E	S	D	K	L	R	M	D	R	A	I	P	D	T	R	H	D	Q	C	Q	R	K	Q	W	R	V	D	L	P	A	T	S	V	V	I	T	F	H	N	E	A	R	S	A	L	L	R	T	V	V	S	V	L	K	K	S	P	P	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	D	G	A	L
Template Known Secondary structure							S		T	T							S		G	G	G	G	G					S	S											S	S																	S		G	G	G										S		S		T					G
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	M	A	A	Q	I	P	H	L	R	V	I	H	L	A	Q	N	Q	G	K	A	I	A	L	K	T	G	A	A	A	A	K	S	E	Y	L	V	C	I	D	G	D	A	L	L	D	R	D	A	A	A	Y	I	V	E	P	M	L	Y	N	P	R	V	G	A	V	T	G	N	P	R	I	R	T	R	S	T	L	V
Query Conservation
Alig confidence		.	.	.																																																														.
Template Conservation		.	.	.																																																														.
Template Sequence		.	.	.	L	G	K	I	E	K	V	R	V	L	R	N	D	R	R	E	G	L	M	R	S	R	V	R	G	A	D	A	A	Q	A	K	V	L	T	F	L	D	S	H	C	E	C	N	E	H	W	L	E	P	L	L	E	R	V	A	E	D	R	T	R	.	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q
Template Known Secondary structure		.	.	.	G	G	G	B	T	T							S	S																	S	S							S	S					T	T													T	T		.											T	T	T
Template Predicted Secondary structure		.	.	.																																																														.
Template SS confidence
					187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		203	.	.	.	.	.																	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Query Sequence		G	K	I	Q	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	S	S	I	I	G	L	I	K	R	T	Q	R	I	Y	G	N	V	F	T	V	S	G	V	I	A	A	F	R	R	S	A	L	A	E	V	G	Y	W	S	D	D	M	I	.	.	.	T	E	D	I	D	I	S	W	K	L
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template Conservation
Template Sequence		Y	V	G	A	S	A	D	L	K	G	G	F	D	W	N	L	V	F	K	W	D	Y	M	T	P	E	Q	R	R	S	R	Q	G	N	P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	L	G	K	Y	D	M	M	M	D	V	W	G	G	E	N	L	E	I	S	F	R	V
Template Known Secondary structure							S	S							T	T																T	S	S		T	T	S					S	S			S	S	S											T	T				T	T			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280									.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																			.	.	.	.	.	.	.	.											.
Query SS confidence																			.	.	.	.	.	.	.	.											.
Query Sequence		Q	L	N	Q	W	T	I	F	Y	E	P	R	A	L	C	W	I	.	.	.	.	.	.	.	.	L	M	P	E	T	L	K	G	L	W	.	K	Q	R	L	R	W	A	Q	G	G	A	E	V	F	L	K	N	M	T	R
Query Conservation																			.	.	.	.	.	.	.	.											.
Alig confidence																			.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		W	Q	C	G	G	S	L	E	I	I	P	C	S	R	V	G	H	V	F	R	K	Q	H	P	Y	T	F	P	G	G	S	G	T	V	F	A	R	N	T	R	R	A	A	E	V	W	M	D	E	Y	K	N	F	Y	Y	A
Template Known Secondary structure				T	T																	S	S			S			T	T																			G	G	G
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions