Job Description P77704 Confidence 36.11% Date Thu Jan 5 12:31:54 GMT 2012 Rank 445 Aligned Residues 165 % Identity 16% Template d1wdda1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 1.35

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure													.	.											.	.
Query SS confidence													.	.											.	.
Query Sequence		I	R	Y	W	E	N	D	A	T	N	K	.	.	H	Y	A	I	A	H	F	N	V	W	.	.	N	A	E	M	L	M	G	V	I	D	A	A	E	E	A	K	S	P	V	I	I	S	F	G	T	G	F	V	G	N	T	S	F	E	D	F	S	H	M	M	V	S	M	A	Q	K	A	T	V	P	V	I	T	H	W
Query Conservation													.	.											.	.
Alig confidence													.	.											.	.																			.																					.	.	.	.
Template Conservation																																													.																					.	.	.	.
Template Sequence		C	A	E	A	I	Y	K	S	Q	A	E	T	G	E	I	K	G	H	Y	L	N	A	T	A	G	T	C	E	E	M	I	K	R	A	V	F	A	R	E	L	G	V	P	.	I	V	M	H	D	Y	L	T	G	G	F	T	A	N	T	S	L	A	H	Y	.	.	.	.	C	R	D	N	G	L	L	L	H	I	H	R
Template Known Secondary structure														S	S			B								S	S															T		S	.																					.	.	.	.					T
Template Predicted Secondary structure																																													.																					.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.
												81	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.															.																															.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.															.																															.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	D	H	G	R	S	M	E	I	I	H	N	A	W	T	.	H	G	M	N	S	L	M	R	D	A	S	A	F	D	F	E	E	N	I	R	L	T	K	E	A	V	D	F	F	H	.	.	.	.	.	.	.	.	P	L	G	I	P	V	E	A	E	L	G	H	V	G	N	E	T
Query Conservation		.	.	.	.	.	.	.	.	.	.															.																															.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.															.																															.	.	.	.	.	.	.	.															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	M	H	A	V	I	D	R	Q	K	N	H	G	M	H	F	R	V	L	A	K	A	L	R	M	S	G	G	D	H	I	H	A	G	T	V	V	G	K	L	E	G	E	R	E	M	T	L	G	F	V	D	L	L	R	D	D	F	I	E	K	D	R	A	R	G	I	F	F	T	Q	D	W	V	S	M	P	.	.	.
Template Known Secondary structure		T	T						S		S	S	S	S																S							S	S	S	S	S																	S					B	G	G	G	T	B		S					T	T			.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	E	E	A	L	A	G	Y	H	Y	T	D	P	D	Q	A	A	E	F	V	E	R	T	G	C	D	S	L	A	V	A	I	G	N	Q	H	G
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	G	V	I	P	V	A	S	G	G	I	H	V	W	H	M	P	A	L	T	E	I	F	G	D	D	S	V	L	Q	F	G	G	G	T	L	G
Template Known Secondary structure		.	.								S	S			G	G	G										S	S	S					S					T
Template Predicted Secondary structure		.	.
Template SS confidence
				373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions