Job Description P77704 Confidence 96.99% Date Thu Jan 5 12:31:54 GMT 2012 Rank 66 Aligned Residues 202 % Identity 13% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.																	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	N	D	A	T	N	K	H	Y	A	I	A	H	F	N	V	.	.	W	N	A	E	M	L	M	G	V	I	D	A	A	E	E	A	K	S	P	V	I	.	I	S	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	F	V	G	N	T	S	F	E	D	F	S	H	M	M	V	S	M	A
Query Conservation																		.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	R	K	F	Y	K	E	N	A	N	V	A	Y	T	V	L	G	Y	P	N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I	K
Template Known Secondary structure		G	G	G	S		S	S	S								T	T	S	S											T	G	G	G	S	S		S								S	S					S	S													T	T												T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		Q	K	A	T	V	P	V	I	T	H	W	.	.	.	.	.	D	H	G	R	S	M	E	I	I	H	N	A	W	T	H	G	M	N	S	L	M	R	D	A	S	A	F	D	F	E	E	N	I	R	L	T	K	E	A	V	D	F	F	H	P	L	G	I	P	V	E	A	E	L	G	H	V	G	N	E	T	V	Y	E
Query Conservation													.	.	.	.	.
Alig confidence			.	.									.	.	.	.	.																							.	.							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																																				.	.							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	.	.	K	K	A	L	V	F	X	V	Y	Y	N	L	I	F	S	Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	.	.	P	E	L	S	F	E	.	.	.	.	E	S	D	D	L	I	K	E	C	E	R	Y	N	I	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	S	S																										T	T							.	.	T	T			G	G	.	.	.	.	G												T				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.																																				.	.							.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		E	A	L	A	G	Y	H	Y	T	D	P	D	Q	A	A	E	F	V	E	R	T	.	G	C	D	S	L	A	V	A	I	G	N	Q	H	G	V	Y	T	S	E	P	Q	L	N	F	E	V	V	K	R	V	R	D	A	V	S	V	P	L	V	L	H	G	A	S	G	I	S	D	A	D	I	K	T	A	I	S	L	G
Query Conservation																							.
Alig confidence		.																					.																							.																		.	.
Template Conservation		.																																												.																		.	.
Template Sequence		.	I	T	L	V	S	V	T	T	P	K	E	R	V	K	K	L	V	K	H	A	K	G	F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	.	Q	D	K	V	K	E	I	R	S	F	T	N	L	P	I	F	V	.	.	G	F	G	I	Q	N	N	Q	D	V	K	R	X	R	K	V
Template Known Secondary structure		.						T	T	S										T	T			S								S		S	S											.									T	T			S					.	.		S	S			S	S							T	T	T
Template Predicted Secondary structure		.																																												.																		.	.
Template SS confidence
			142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	K	I	N	I	H	T	E	L	C	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	G	V	I	V	G	T	S	I	V	K	C
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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