Job Description P77704 Confidence 95.44% Date Thu Jan 5 12:31:54 GMT 2012 Rank 119 Aligned Residues 225 % Identity 16% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		4	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.																	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure												.												.	.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.												.	.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	R	Y	W	E	N	D	A	T	.	N	K	H	Y	A	I	A	H	F	N	V	.	.	.	W	N	A	E	M	L	M	G	V	I	D	A	A	E	E	A	K	S	P	V	I	.	I	S	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	F	V	G	N	T	S	F	E	D	F	S
Query Conservation												.												.	.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.												.	.	.																						.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	Q	A	L	F	Q	R	L	S	A	A	Q	Q	G	A	F	V	P	F	V	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D	I	C	F
Template Known Secondary structure														T	B									T	T	S	S															T	T		S	S										T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		63	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure											.											.	.	.	.	.
Query SS confidence											.											.	.	.	.	.
Query Sequence		H	M	M	V	S	M	A	Q	K	.	A	T	V	P	V	I	T	H	W	D	.	.	.	.	.	H	G	R	S	M	E	I	I	H	N	A	W	T	H	G	M	N	S	L	M	R	D	A	S	A	F	D	F	E	E	N	I	R	L	T	K	E	A	V	D	F	F	H	P	L	G	I	P	V	E	A	E	L	G	H
Query Conservation											.											.	.	.	.	.
Alig confidence											.											.	.	.	.	.																						.	.									.	.	.	.																			.	.
Template Conservation																																																.	.									.	.	.	.																			.	.
Template Sequence		E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	L	M	Y	A	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	.	.	A	D	V	P	T	N	E	S	.	.	.	.	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	F	I	A	.	.
Template Known Secondary structure												T	T	S													T	T													T							.	.	T	T	S		G	G	G		.	.	.	.										T	T								.	.
Template Predicted Secondary structure																																																.	.									.	.	.	.																			.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	N	E	T	V	Y	E	E	A	L	A	G	Y	H	Y	T	D	P	D	Q	A	A	E	F	V	E	R	T	G	C	D	S	L	A	V	A	I	G	N	Q	H	G	V	Y	T	S	E	P	Q	L	N	F	E	V	V	K	R	V	R	D	A	V	S	V	P	L	V	L	H	G	A	S	G	I	S	D	A	D	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.				.	.	.	.	.	.	.	.																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.				.	.	.	.	.	.	.	.																								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S	R	A	.	.	P	V	H	.	.	.	.	.	.	.	.	A	L	L	E	R	L	Q	Q	F	D	A	P	P	A	L	L	G	F	G	I	S	E	P	.	A	Q	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T			S												S									.	.				.	.	.	.	.	.	.	.									T	T								S	S			S		.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.				.	.	.	.	.	.	.	.																								.
Template SS confidence
																155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		K	T	A	I	S	L	G	I	A	K	I	N	I	H	T	E	L	C	Q	A	A	M	V	A	V	K	E	N	Q	D	Q	.	.	P	F	L	H	L	E	R	E	V	R	K	A	V	K
Query Conservation																																	.	.
Alig confidence																																	.	.
Template Conservation
Template Sequence		K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A	M	K	K	A	T	K
Template Known Secondary structure							T	T		S					S	S									T	T	T																			T	T	B
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions